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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0634000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.7 (0.0459) R2 : 0.188
β1 : 1.55 (0.176) R2dD : 0.166 R2D : 0.0779
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.53 (0.212) R2dE : 0.123 R2E : 0.0271
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.167 (0.106) R2dN8 : 0.00723 R2N8 : -0.0257
σ : 0.835
deviance : 321.78
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.4
memory length : 1096
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.63 0.833 3.71 1.47 0.567 1.66 0.894 0.224 0.179 15.6 27.4 321 -- --
314.68 0.826 3.7 1.51 0.568 1.64 0.833 -- 0.187 15.6 27.43 316 -- --
316.94 0.829 3.7 1.49 0.575 1.66 -- 0.1 0.18 15.5 27.32 314 -- --
316.81 0.829 3.7 1.53 0.565 1.64 -- -- 0.19 15.6 27.33 316 -- --
321.64 0.835 3.71 1.48 -- 1.55 -- 0.368 0.145 -- 27.93 1090 -- --
353.33 0.881 3.78 1.08 0.235 -- 0.603 -- -0.173 13.9 -- -- -- --
354.65 0.882 3.78 1.1 0.236 -- -- -- -0.17 13.2 -- -- -- --
321.78 0.835 3.7 1.55 -- 1.53 -- -- 0.167 -- 28.4 1096 -- --
371.21 0.897 3.76 -- 0.385 0.975 -- -- -0.106 14.9 27.1 307 -- --
358.09 0.884 3.78 1.09 -- -- -- -- -0.175 -- -- -- -- --
386.49 0.92 3.8 -- 0.217 -- -- -- -0.293 13 -- -- -- --
375.54 0.903 3.77 -- -- 0.871 -- -- -0.135 -- 25.6 583 -- --
389.43 0.921 3.81 -- -- -- -- -- -0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.82 wind 9.0 43200 > th dose dependent rect. 18 12
2 309.02 wind 9.0 43200 > th dose independent rect. 18 4
3 309.10 wind 9.0 43200 > th dose dependent rect. 18 5
4 309.12 wind 9.0 43200 < th dose independent rect. 18 4
9 309.90 wind 9.0 43200 > th dose independent rect. 19 2
13 310.38 wind 9.0 43200 > th dose independent rect. 18 12
14 310.46 wind 9.0 43200 > th dose independent rect. 18 7
16 310.67 wind 9.0 43200 > th dose dependent rect. 18 7
19 310.82 wind 9.0 43200 < th dose independent rect. 18 7
30 311.32 wind 9.0 43200 < th dose independent rect. 18 12
39 312.03 temperature 20.0 270 > th dose dependent sin 9 NA
45 312.75 precipitation 0.1 43200 > th dose dependent rect. 20 2
57 313.28 temperature 20.0 270 > th dose dependent rect. 16 22
62 313.50 temperature 10.0 270 > th dose dependent sin 9 NA
68 313.79 temperature 30.0 270 < th dose dependent sin 9 NA
74 314.11 wind 9.0 14400 > th dose independent rect. 15 2
85 314.78 temperature 30.0 270 < th dose dependent rect. 21 23
94 315.09 wind 9.0 14400 < th dose independent rect. 15 2
104 315.42 radiation 1.0 4320 < th dose independent rect. 17 13
112 315.69 radiation 1.0 4320 < th dose independent rect. 17 1
113 315.69 precipitation 0.1 43200 > th dose independent rect. 20 2
115 315.77 precipitation 0.1 43200 < th dose independent rect. 20 2
116 315.77 precipitation 0.1 43200 < th dose dependent rect. 20 2
121 315.86 wind 9.0 14400 > th dose dependent rect. 3 14
131 316.03 temperature 30.0 270 < th dose dependent rect. 15 22
133 316.06 wind 1.0 43200 < th dose dependent rect. 19 2
136 316.09 radiation 20.0 4320 > th dose dependent rect. 16 15
141 316.17 radiation 1.0 4320 > th dose independent rect. 17 13
159 316.46 wind 9.0 14400 > th dose independent rect. 4 10
174 316.59 temperature 25.0 270 < th dose dependent rect. 24 23
175 316.60 radiation 20.0 4320 > th dose dependent rect. 16 1
192 316.63 temperature 30.0 270 < th dose dependent rect. 8 23
211 316.89 wind 9.0 14400 > th dose independent rect. 3 14
218 316.96 radiation 1.0 4320 > th dose independent rect. 17 1
225 317.03 temperature 30.0 270 < th dose dependent rect. 18 23
226 317.04 radiation 20.0 4320 < th dose independent rect. 15 16
229 317.06 radiation 1.0 4320 < th dose dependent rect. 17 1
233 317.14 temperature 30.0 270 < th dose dependent no NA NA
259 317.41 temperature 30.0 1440 < th dose dependent rect. 17 1
263 317.45 wind 9.0 14400 > th dose dependent sin 4 NA
269 317.51 wind 9.0 14400 > th dose dependent rect. 15 2
271 317.53 radiation 1.0 1440 < th dose dependent rect. 17 3
274 317.57 wind 9.0 14400 > th dose dependent rect. 9 8
280 317.63 radiation 1.0 1440 < th dose dependent rect. 17 10
284 317.65 radiation 1.0 1440 < th dose dependent rect. 17 7
286 317.67 radiation 1.0 43200 < th dose dependent rect. 20 5
288 317.69 temperature 15.0 90 > th dose dependent rect. 6 23
297 317.77 temperature 30.0 4320 < th dose independent rect. 9 1
299 317.81 radiation 20.0 4320 < th dose independent rect. 15 9
300 317.82 radiation 20.0 4320 < th dose independent rect. 15 6
303 317.83 temperature 30.0 4320 > th dose independent rect. 9 2
309 317.84 temperature 25.0 720 < th dose dependent rect. 9 21
314 317.87 radiation 20.0 4320 < th dose independent rect. 15 12
356 318.09 radiation 1.0 4320 < th dose independent rect. 17 3
364 318.12 radiation 1.0 4320 < th dose independent rect. 17 7
367 318.13 wind 9.0 14400 > th dose independent rect. 11 1
377 318.15 radiation 1.0 4320 < th dose independent rect. 17 10
386 318.17 temperature 30.0 4320 < th dose independent rect. 20 15
390 318.19 temperature 30.0 4320 < th dose independent rect. 3 8
396 318.21 wind 9.0 14400 > th dose independent sin 4 NA
415 318.28 temperature 15.0 720 > th dose dependent rect. 15 17
425 318.32 humidity 50.0 14400 > th dose dependent rect. 1 1
428 318.33 temperature 25.0 720 < th dose dependent rect. 13 17
434 318.37 temperature 30.0 30 < th dose dependent rect. 3 23
441 318.40 humidity 60.0 14400 > th dose independent rect. 18 1
442 318.40 wind 9.0 14400 > th dose independent rect. 11 3
454 318.43 radiation 1.0 4320 < th dose dependent rect. 19 11
463 318.47 radiation 1.0 4320 < th dose dependent rect. 23 7
466 318.48 wind 9.0 14400 > th dose independent rect. 11 6
467 318.48 wind 9.0 14400 > th dose independent rect. 9 8
498 318.58 radiation 30.0 14400 < th dose independent rect. 5 4
503 318.58 radiation 30.0 14400 < th dose independent rect. 20 13
505 318.58 radiation 30.0 14400 < th dose independent rect. 18 15
512 318.59 radiation 1.0 4320 < th dose dependent rect. 1 5
516 318.60 radiation 30.0 14400 < th dose independent rect. 23 10
519 318.61 radiation 10.0 14400 < th dose independent rect. 4 3
520 318.61 radiation 10.0 14400 < th dose independent rect. 2 5
528 318.63 wind 9.0 14400 > th dose independent rect. 9 5
543 318.69 radiation 30.0 14400 < th dose independent sin 10 NA
544 318.69 radiation 1.0 4320 < th dose dependent rect. 4 2
549 318.71 temperature 30.0 270 < th dose dependent rect. 21 14
572 318.80 radiation 1.0 4320 < th dose independent rect. 8 22
628 318.90 temperature 20.0 270 > th dose dependent rect. 18 16
645 318.94 temperature 10.0 270 > th dose dependent rect. 4 23
658 318.99 humidity 60.0 14400 < th dose independent rect. 18 1
668 319.02 temperature 20.0 270 > th dose dependent rect. 19 14
671 319.03 atmosphere 1000.0 1440 > th dose independent rect. 2 7
682 319.07 temperature 30.0 4320 > th dose dependent rect. 10 1
683 319.07 temperature 15.0 90 > th dose dependent rect. 1 23
710 319.12 radiation 40.0 14400 > th dose dependent rect. 12 1
737 319.21 atmosphere 1000.0 1440 > th dose independent rect. 2 9
776 319.30 temperature 25.0 720 < th dose dependent rect. 3 23
787 319.33 wind 9.0 14400 < th dose independent rect. 11 1
788 319.33 atmosphere 1000.0 1440 < th dose independent rect. 2 9
838 319.40 atmosphere 1000.0 1440 < th dose independent rect. 2 7
841 319.41 radiation 20.0 4320 < th dose independent sin 14 NA
848 319.43 temperature 25.0 1440 > th dose independent rect. 16 1
850 319.43 humidity 50.0 14400 > th dose independent rect. 16 17
851 319.43 radiation 1.0 4320 > th dose independent rect. 8 22
867 319.49 humidity 50.0 14400 < th dose independent rect. 16 17
870 319.49 humidity 80.0 14400 < th dose dependent rect. 19 12
874 319.50 atmosphere 1000.0 1440 > th dose independent rect. 2 1
880 319.51 humidity 80.0 43200 > th dose dependent rect. 19 3
882 319.51 radiation 1.0 1440 < th dose dependent rect. 15 5
905 319.54 temperature 25.0 1440 < th dose independent rect. 16 2
918 319.57 radiation 1.0 1440 < th dose dependent rect. 15 12
929 319.59 radiation 1.0 1440 < th dose dependent rect. 15 9
965 319.67 radiation 30.0 4320 < th dose independent rect. 11 21
966 319.67 wind 9.0 14400 > th dose dependent rect. 11 2
968 319.67 atmosphere 1000.0 1440 < th dose dependent rect. 2 9
975 319.69 radiation 30.0 4320 < th dose independent rect. 13 19
979 319.70 radiation 1.0 43200 < th dose dependent rect. 1 1
983 319.71 atmosphere 1000.0 1440 > th dose independent rect. 5 4
987 319.71 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
989 319.72 atmosphere 995.0 43200 > th dose independent rect. 12 1