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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0633800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor-like protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.88 (0.0406) R2 : 0.587
β1 : 3.17 (0.166) R2dD : 0.446 R2D : 0.209
β2 : 1.36 (0.0985) R2dC : 0.175 R2C : 0.195
β3 : -2.11 (0.175) R2dE : 0.182 R2E : -0.029
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0417 (0.0917) R2dN8 : 0.000327 R2N8 : -0.00794
σ : 0.744
deviance : 255.15
__
_____
C
peak time of C : 9.2
E
wheather : temperature
threshold : 10.49
memory length : 4014
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
251.31 0.745 4.81 3.56 1.36 -2.05 0.558 1.78 0.155 9.19 10.4 3999 -- --
254.25 0.743 4.88 3.15 1.37 -2.1 0.55 -- 0.0445 9.18 10.98 3998 -- --
252.4 0.74 4.81 3.57 1.37 -2.05 -- 1.73 0.156 9.21 10.54 4014 -- --
255.15 0.744 4.88 3.17 1.36 -2.11 -- -- 0.0417 9.2 10.49 4014 -- --
339.89 0.859 4.86 3.58 -- -2.27 -- 1.96 0.216 -- 16.34 2211 -- --
334.09 0.857 4.97 2.21 1.45 -- 0.526 -- -0.367 9.55 -- -- -- --
335.11 0.857 4.97 2.23 1.44 -- -- -- -0.366 9.59 -- -- -- --
342.31 0.862 4.9 3.11 -- -2.47 -- -- 0.128 -- 13.93 2201 -- --
443.49 0.981 5 -- 1.23 -1.09 -- -- -0.449 10.5 19.81 430 -- --
458.46 1 5.01 2.22 -- -- -- -- -0.363 -- -- -- -- --
466.14 1.01 5.02 -- 1.44 -- -- -- -0.614 9.47 -- -- -- --
513.79 1.06 5.01 -- -- -1.64 -- -- -0.365 -- 20.46 691 -- --
588.29 1.13 5.06 -- -- -- -- -- -0.609 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.23 radiation 10 14400 < th dose independent rect. 17 8
8 240.47 radiation 10 14400 < th dose independent rect. 17 4
10 240.52 radiation 10 14400 < th dose independent rect. 17 2
13 241.86 wind 9 43200 > th dose independent rect. 19 13
14 241.92 wind 9 43200 > th dose dependent rect. 19 12
17 242.50 radiation 20 4320 < th dose independent rect. 16 15
18 242.79 wind 9 43200 < th dose independent rect. 19 13
23 243.16 radiation 30 4320 > th dose dependent rect. 15 17
25 243.84 wind 5 43200 > th dose dependent rect. 6 1
26 243.89 radiation 30 4320 < th dose independent rect. 15 17
41 245.51 radiation 10 4320 > th dose dependent rect. 16 15
48 245.97 radiation 10 14400 > th dose dependent rect. 17 13
51 246.07 wind 9 43200 > th dose dependent rect. 20 6
61 246.47 wind 9 43200 > th dose independent rect. 19 5
68 246.70 wind 5 43200 > th dose dependent rect. 5 5
72 246.90 wind 7 43200 < th dose independent rect. 5 5
75 246.98 wind 9 43200 > th dose dependent rect. 17 15
86 247.25 wind 7 43200 > th dose independent rect. 5 5
89 247.37 wind 9 43200 < th dose independent rect. 19 5
94 247.51 wind 5 43200 > th dose dependent rect. 9 1
106 247.72 radiation 1 14400 > th dose dependent rect. 18 1
133 248.09 wind 9 43200 < th dose independent rect. 17 18
149 248.27 wind 5 43200 > th dose dependent sin 6 NA
155 248.40 wind 9 43200 < th dose independent sin 10 NA
189 248.74 wind 9 43200 > th dose independent sin 10 NA
192 248.77 wind 7 43200 > th dose dependent sin 10 NA
224 249.28 wind 7 43200 > th dose independent sin 8 NA
230 249.36 wind 5 43200 > th dose independent rect. 6 1
235 249.38 wind 5 43200 > th dose dependent rect. 2 12
247 249.47 wind 5 43200 > th dose dependent rect. 23 15
268 249.59 wind 7 43200 < th dose independent sin 7 NA
286 249.77 wind 7 43200 < th dose independent rect. 6 1
307 249.93 temperature 10 4320 > th dose dependent rect. 16 8
319 250.04 temperature 10 4320 > th dose dependent rect. 21 2
320 250.04 temperature 30 4320 < th dose dependent rect. 21 2
321 250.04 temperature 30 4320 < th dose dependent rect. 20 4
357 250.32 wind 7 43200 > th dose independent rect. 23 13
358 250.32 wind 7 43200 < th dose independent rect. 23 13
376 250.41 temperature 30 4320 < th dose dependent rect. 16 9
395 250.54 temperature 10 4320 > th dose dependent rect. 17 1
457 250.86 wind 5 43200 > th dose independent sin 4 NA
474 250.95 wind 5 43200 < th dose independent sin 4 NA
544 251.31 wind 5 43200 > th dose independent rect. 23 16
549 251.33 temperature 10 4320 > th dose dependent sin 16 NA
563 251.39 wind 5 43200 > th dose independent rect. 2 13
575 251.42 wind 5 43200 < th dose independent rect. 23 16
596 251.50 wind 5 43200 < th dose independent rect. 1 14
715 251.83 radiation 30 4320 > th dose dependent rect. 15 2
771 251.94 radiation 1 14400 < th dose independent rect. 17 18
774 251.94 radiation 40 4320 < th dose dependent rect. 17 14
798 252.01 radiation 30 14400 < th dose independent rect. 7 1
860 252.14 temperature 30 4320 < th dose dependent rect. 17 1
885 252.21 radiation 1 14400 > th dose independent rect. 17 16
908 252.29 radiation 30 14400 < th dose independent rect. 20 12
927 252.34 radiation 1 14400 > th dose independent rect. 17 18
952 252.41 radiation 30 14400 < th dose independent rect. 22 10
956 252.42 radiation 1 14400 < th dose independent sin 10 NA
987 252.51 radiation 40 4320 < th dose independent rect. 14 19
997 252.54 temperature 30 4320 < th dose dependent sin 15 NA