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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0633300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.051) R2 : 0.00583
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.176 (0.107) R2dN8 : 0.00753 R2N8 : 0.00583
σ : 0.96
deviance : 423.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
391.5 0.93 3.07 0.26 0.188 4.24 -1.35 8.97 -0.128 3.65 7.063 10 -- --
406.82 0.939 3 0.338 0.116 2.74 -1.5 -- 0.000124 3.21 7.604 10 -- --
396.59 0.928 3.07 0.277 0.159 4.29 -- 9.99 -0.113 3.04 7.138 10 -- --
412.29 0.946 3.02 0.176 0.137 1.76 -- -- -0.118 2.83 7.6 10 -- --
397.99 0.929 3.07 0.247 -- 4.23 -- 10.2 -0.121 -- 7.257 10 -- --
418 0.958 3.04 0.0116 0.0543 -- -1.22 -- -0.18 2.99 -- -- -- --
423.01 0.963 3.04 0.0386 0.0493 -- -- -- -0.172 2.65 -- -- -- --
413.31 0.947 3.02 0.177 -- 1.66 -- -- -0.118 -- 7.6 10 -- --
413.08 0.947 3.03 -- 0.133 1.65 -- -- -0.135 2.95 7.6 10 -- --
423.15 0.961 3.04 0.0407 -- -- -- -- -0.171 -- -- -- -- --
423.04 0.962 3.04 -- 0.0501 -- -- -- -0.177 2.66 -- -- -- --
414.07 0.948 3.03 -- -- 1.55 -- -- -0.139 -- 7.6 10 -- --
423.19 0.96 3.04 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 380.51 wind 9 90 > th dose dependent rect. 16 19
3 384.19 wind 9 90 > th dose independent rect. 16 19
4 384.85 wind 7 30 > th dose dependent rect. 9 1
8 385.49 wind 7 30 > th dose independent rect. 9 1
42 387.12 wind 7 10 > th dose dependent rect. 17 19
61 388.43 wind 7 10 > th dose dependent rect. 9 10
145 389.92 wind 7 10 > th dose dependent rect. 14 22
160 390.71 wind 9 10 > th dose dependent sin 16 NA
166 391.09 wind 7 10 > th dose independent rect. 17 21
224 391.52 wind 7 10 > th dose dependent no NA NA
264 392.09 wind 7 10 > th dose dependent rect. 11 23
267 392.28 wind 7 10 > th dose independent rect. 17 19
273 392.47 wind 7 10 > th dose dependent sin 21 NA
301 393.44 wind 7 10 > th dose independent rect. 9 10
317 393.85 wind 9 10 > th dose dependent rect. 17 1
321 393.86 wind 9 30 > th dose independent rect. 17 1
336 394.00 wind 9 90 > th dose dependent sin 10 NA
357 394.24 wind 9 90 > th dose independent sin 11 NA
361 394.30 wind 7 90 > th dose dependent rect. 8 11
387 394.51 wind 7 10 > th dose independent sin 1 NA
393 394.59 radiation 10 90 < th dose dependent rect. 8 1
399 394.59 wind 7 90 > th dose dependent rect. 23 20
447 395.10 wind 9 10 > th dose dependent sin 10 NA
489 395.35 wind 9 90 > th dose independent sin 18 NA
502 395.51 wind 9 90 < th dose independent sin 11 NA
558 395.91 wind 7 10 < th dose independent sin 22 NA
560 395.92 wind 9 90 < th dose independent sin 20 NA
564 395.96 wind 9 90 < th dose independent no NA NA
596 396.02 humidity 90 90 > th dose independent rect. 8 1
628 396.15 wind 9 90 > th dose independent rect. 9 9
646 396.17 wind 7 90 > th dose dependent rect. 8 17
659 396.20 wind 7 90 > th dose independent rect. 23 12
665 396.22 wind 9 90 > th dose independent rect. 22 20
756 396.38 radiation 10 90 < th dose independent rect. 8 1
825 396.61 wind 7 90 > th dose dependent no NA NA
975 396.85 wind 9 90 > th dose independent no NA NA