Os04g0632600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like protein kinase 5.
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Os04g0632600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like protein kinase 5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.17 | 0.719 | 10.4 | 2.24 | 1.96 | -1.79 | 0.685 | 0.499 | 0.672 | 10.6 | 20.3 | 1623 | -- | -- |
| 234.66 | 0.713 | 10.4 | 2.19 | 1.95 | -1.84 | 0.769 | -- | 0.674 | 10.6 | 20.3 | 1610 | -- | -- |
| 236.1 | 0.716 | 10.4 | 2.27 | 1.96 | -1.8 | -- | 0.497 | 0.677 | 10.6 | 20.26 | 1624 | -- | -- |
| 236.55 | 0.716 | 10.4 | 2.18 | 1.95 | -1.85 | -- | -- | 0.662 | 10.6 | 20.32 | 1610 | -- | -- |
| 437.27 | 0.974 | 10.5 | 2.19 | -- | -1.81 | -- | 0.192 | 0.645 | -- | 20.5 | 910 | -- | -- |
| 303.15 | 0.816 | 10.5 | 1.39 | 1.96 | -- | 0.857 | -- | 0.257 | 10.6 | -- | -- | -- | -- |
| 306.17 | 0.819 | 10.5 | 1.42 | 1.95 | -- | -- | -- | 0.259 | 10.6 | -- | -- | -- | -- |
| 434.57 | 0.971 | 10.4 | 2.09 | -- | -1.89 | -- | -- | 0.671 | -- | 20.57 | 792 | -- | -- |
| 323.44 | 0.842 | 10.5 | -- | 2.12 | -0.897 | -- | -- | 0.249 | 10.8 | 20.58 | 1505 | -- | -- |
| 540.84 | 1.09 | 10.5 | 1.38 | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
| 359.38 | 0.887 | 10.5 | -- | 1.94 | -- | -- | -- | 0.101 | 10.5 | -- | -- | -- | -- |
| 490.84 | 1.03 | 10.4 | -- | -- | -1.4 | -- | -- | 0.624 | -- | 25.3 | 820 | -- | -- |
| 591.43 | 1.14 | 10.6 | -- | -- | -- | -- | -- | 0.0965 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 2 | 220.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 3 | 220.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 8 | 222.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 9 | 222.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 10 | 222.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 11 | 222.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 35 | 227.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 36 | 227.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 48 | 228.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 53 | 228.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 58 | 229.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 66 | 229.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 13 |
| 76 | 229.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 77 | 229.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 78 | 229.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 91 | 229.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 127 | 230.76 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 153 | 231.12 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 216 | 232.46 | humidity | 70 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 218 | 232.50 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 227 | 232.56 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 237 | 232.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 240 | 232.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 242 | 232.88 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 285 | 233.50 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 402 | 234.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 449 | 235.44 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 452 | 235.45 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 544 | 236.42 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 575 | 236.79 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 597 | 237.04 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 613 | 237.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 619 | 237.27 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 634 | 237.54 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 652 | 237.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 671 | 238.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 683 | 238.28 | humidity | 90 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 689 | 238.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 703 | 238.57 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 733 | 239.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 762 | 239.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 772 | 239.50 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 22 |
| 819 | 240.24 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 823 | 240.27 | wind | 1 | 720 | < th | dose independent | rect. | 23 | 1 |
| 837 | 240.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 840 | 240.58 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 854 | 240.81 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 857 | 240.87 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 882 | 241.14 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 887 | 241.16 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 889 | 241.18 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 18 | NA |
| 927 | 241.55 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 929 | 241.56 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 937 | 241.69 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 946 | 241.76 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 950 | 241.77 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 964 | 241.87 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 988 | 242.13 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |