Os04g0632400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0632400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.37 | 0.35 | 5.75 | 0.195 | 0.316 | -0.453 | -0.52 | -2.79 | -0.0193 | 1.26 | 30.1 | 409 | -- | -- |
| 55.76 | 0.348 | 5.72 | 0.436 | 0.299 | -0.742 | -0.523 | -- | 0.0196 | 1.2 | 29.8 | 396 | -- | -- |
| 56.41 | 0.35 | 5.75 | 0.196 | 0.326 | -0.407 | -- | -2.92 | -0.0162 | 1.63 | 30 | 440 | -- | -- |
| 56.76 | 0.351 | 5.72 | 0.454 | 0.298 | -0.732 | -- | -- | 0.013 | 1.3 | 29.85 | 396 | -- | -- |
| 60.63 | 0.363 | 5.72 | 0.327 | -- | -0.644 | -- | -1.14 | 0.0364 | -- | 29.37 | 238 | -- | -- |
| 68.42 | 0.388 | 5.71 | 0.346 | 0.475 | -- | -0.0341 | -- | 0.042 | 3.38 | -- | -- | -- | -- |
| 68.42 | 0.387 | 5.71 | 0.346 | 0.475 | -- | -- | -- | 0.0421 | 3.41 | -- | -- | -- | -- |
| 60.78 | 0.363 | 5.71 | 0.475 | -- | -0.762 | -- | -- | 0.0559 | -- | 29.5 | 265 | -- | -- |
| 62.01 | 0.367 | 5.73 | -- | 0.33 | -0.66 | -- | -- | -0.0429 | 1.79 | 30.07 | 397 | -- | -- |
| 81.09 | 0.421 | 5.71 | 0.366 | -- | -- | -- | -- | 0.0547 | -- | -- | -- | -- | -- |
| 71.58 | 0.396 | 5.71 | -- | 0.482 | -- | -- | -- | 0.0036 | 3.41 | -- | -- | -- | -- |
| 66.63 | 0.38 | 5.72 | -- | -- | -0.708 | -- | -- | 0.00472 | -- | 29.52 | 256 | -- | -- |
| 84.63 | 0.429 | 5.72 | -- | -- | -- | -- | -- | 0.0141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.50 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 16 | 52.95 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 19 | 53.16 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 21 | 53.29 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |
| 57 | 53.71 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 63 | 53.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 64 | 53.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 66 | 54.07 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 109 | 54.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 131 | 54.40 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 10 |
| 169 | 54.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 182 | 54.73 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 198 | 54.79 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 203 | 54.81 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 213 | 54.87 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 237 | 54.92 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 251 | 54.96 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 20 |
| 262 | 54.99 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 22 |
| 269 | 55.00 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 295 | 55.06 | temperature | 30 | 720 | > th | dose dependent | sin | 7 | NA |
| 298 | 55.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 306 | 55.11 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 307 | 55.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 329 | 55.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 367 | 55.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 375 | 55.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 397 | 55.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 402 | 55.36 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 434 | 55.37 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 508 | 55.55 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 615 | 55.59 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 616 | 55.59 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 23 |
| 692 | 55.68 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 14 |
| 789 | 55.80 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 14 |
| 886 | 55.97 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |