Os04g0632300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0632300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.22 | 0.41 | 6.54 | 0.291 | 1.46 | 0.736 | -0.398 | -0.107 | 0.466 | 3.04 | 21.4 | 758 | -- | -- |
| 76.25 | 0.407 | 6.53 | 0.319 | 1.46 | 0.742 | -0.398 | -- | 0.469 | 3.04 | 21.4 | 752 | -- | -- |
| 76.73 | 0.408 | 6.54 | 0.286 | 1.46 | 0.74 | -- | -0.147 | 0.463 | 3.03 | 21.31 | 765 | -- | -- |
| 76.8 | 0.408 | 6.53 | 0.326 | 1.46 | 0.746 | -- | -- | 0.473 | 3.03 | 21.34 | 759 | -- | -- |
| 191.89 | 0.645 | 6.54 | 0.303 | -- | 0.99 | -- | -0.0428 | 0.448 | -- | 21.3 | 985 | -- | -- |
| 95.27 | 0.458 | 6.49 | 0.583 | 1.5 | -- | -0.471 | -- | 0.675 | 2.7 | -- | -- | -- | -- |
| 96.04 | 0.459 | 6.49 | 0.595 | 1.49 | -- | -- | -- | 0.678 | 2.68 | -- | -- | -- | -- |
| 191.92 | 0.645 | 6.55 | 0.264 | -- | 1.01 | -- | -- | 0.435 | -- | 21.37 | 988 | -- | -- |
| 79.26 | 0.415 | 6.54 | -- | 1.46 | 0.838 | -- | -- | 0.418 | 3.06 | 21.3 | 760 | -- | -- |
| 225.96 | 0.702 | 6.48 | 0.658 | -- | -- | -- | -- | 0.716 | -- | -- | -- | -- | -- |
| 105.37 | 0.48 | 6.5 | -- | 1.5 | -- | -- | -- | 0.612 | 2.68 | -- | -- | -- | -- |
| 193.57 | 0.648 | 6.55 | -- | -- | 1.07 | -- | -- | 0.397 | -- | 21.4 | 990 | -- | -- |
| 237.4 | 0.719 | 6.5 | -- | -- | -- | -- | -- | 0.643 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.56 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 12 |
| 2 | 76.61 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 14 |
| 15 | 77.46 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 20 |
| 18 | 77.55 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 34 | 78.01 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 18 |
| 48 | 78.28 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 19 |
| 52 | 78.32 | temperature | 20 | 720 | < th | dose independent | rect. | 14 | 17 |
| 65 | 78.46 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 170 | 79.23 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 23 |
| 176 | 79.27 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 180 | 79.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 187 | 79.34 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 190 | 79.37 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 206 | 79.46 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 209 | 79.46 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 221 | 79.52 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 228 | 79.53 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 229 | 79.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 11 |
| 265 | 79.67 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 271 | 79.68 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 278 | 79.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 319 | 79.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 350 | 79.94 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 358 | 79.96 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 386 | 80.02 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 409 | 80.07 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 412 | 80.08 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 10 | NA |
| 433 | 80.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 6 |
| 437 | 80.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 472 | 80.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 605 | 80.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 639 | 80.55 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 647 | 80.56 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 658 | 80.57 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 660 | 80.58 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 679 | 80.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 688 | 80.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 750 | 80.70 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 787 | 80.76 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 871 | 80.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |