FiT-DB / Search/ Help/ Sample detail

Os04g0632100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor-like protein kinase 4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.19 (0.0196) R2 : 0.33
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.745 (0.0513) R2dC : 0.312 R2C : 0.31
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0413) R2dN8 : 0.0203 R2N8 : 0.0185
σ : 0.37
deviance : 62.67
__
_____
C
peak time of C : 5.23
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.94 0.339 9.18 0.133 0.717 -0.57 -0.292 -0.156 0.179 7.83 15.58 75 -- --
51.99 0.336 9.17 0.126 0.72 -0.578 -0.348 -- 0.181 7.9 15.32 76 -- --
52.12 0.336 9.18 0.136 0.725 -0.58 -- -0.245 0.181 7.91 15.52 77 -- --
52.39 0.337 9.17 0.122 0.719 -0.584 -- -- 0.183 7.94 15.32 76 -- --
63.89 0.372 9.23 0.129 -- -0.7 -- -0.328 0.148 -- 3.98 590 -- --
62.37 0.37 9.19 0.0685 0.746 -- -0.27 -- 0.141 5.28 -- -- -- --
62.55 0.37 9.19 0.068 0.744 -- -- -- 0.143 5.24 -- -- -- --
62.94 0.37 9.23 0.1 -- -0.719 -- -- 0.143 -- 3.68 629 -- --
52.78 0.338 9.18 -- 0.714 -0.57 -- -- 0.173 7.86 15.33 76 -- --
91.48 0.447 9.2 0.0939 -- -- -- -- 0.161 -- -- -- -- --
62.67 0.37 9.19 -- 0.745 -- -- -- 0.135 5.23 -- -- -- --
62.23 0.367 9.19 -- -- -0.806 -- -- 0.16 -- 3.68 644 -- --
91.71 0.447 9.2 -- -- -- -- -- 0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.69 atmosphere 1000.0 270 > th dose dependent rect. 2 5
2 47.74 radiation 30.0 270 < th dose dependent rect. 2 16
4 47.78 radiation 40.0 90 < th dose dependent rect. 4 16
11 48.18 temperature 10.0 30 > th dose dependent rect. 9 19
16 48.38 radiation 40.0 10 < th dose dependent rect. 5 15
18 48.44 radiation 20.0 90 < th dose independent rect. 4 16
22 48.53 atmosphere 1000.0 270 > th dose dependent rect. 3 3
29 48.63 radiation 40.0 270 < th dose dependent rect. 14 17
46 48.96 wind 5.0 270 < th dose independent rect. 2 5
47 48.96 radiation 30.0 270 < th dose independent rect. 14 17
68 49.22 atmosphere 1015.0 270 < th dose independent rect. 7 19
74 49.28 radiation 40.0 10 < th dose dependent rect. 5 17
81 49.35 precipitation 0.1 270 < th dose independent rect. 7 19
83 49.35 precipitation 0.1 270 < th dose dependent rect. 7 19
90 49.42 precipitation 0.1 270 < th dose independent rect. 2 5
91 49.42 precipitation 0.1 270 < th dose dependent rect. 2 5
94 49.44 radiation 20.0 270 < th dose independent rect. 2 16
96 49.47 radiation 30.0 270 < th dose independent rect. 11 20
100 49.50 radiation 40.0 270 < th dose dependent rect. 11 20
102 49.54 temperature 10.0 90 > th dose dependent rect. 20 8
107 49.56 wind 9.0 270 < th dose independent rect. 7 8
119 49.68 wind 9.0 270 < th dose independent rect. 7 19
123 49.70 precipitation 0.1 270 < th dose independent rect. 7 8
124 49.70 precipitation 0.1 270 < th dose dependent rect. 7 8
128 49.73 wind 7.0 270 < th dose independent rect. 15 16
129 49.73 temperature 10.0 10 > th dose dependent rect. 9 8
132 49.79 temperature 10.0 270 > th dose independent rect. 7 8
133 49.79 atmosphere 1015.0 270 < th dose independent rect. 7 8
134 49.79 temperature 10.0 270 > th dose independent rect. 15 16
136 49.81 humidity 50.0 270 > th dose independent rect. 7 8
142 49.83 temperature 10.0 270 > th dose independent rect. 2 5
144 49.83 temperature 30.0 270 < th dose independent rect. 2 5
145 49.83 humidity 50.0 270 > th dose independent rect. 2 5
147 49.83 atmosphere 995.0 270 > th dose independent rect. 2 5
148 49.83 atmosphere 1015.0 270 < th dose independent rect. 2 5
149 49.83 radiation 30.0 270 < th dose independent rect. 2 5
151 49.83 atmosphere 1000.0 90 > th dose independent rect. 4 16
152 49.83 temperature 10.0 270 > th dose independent rect. 7 19
154 49.85 atmosphere 1000.0 10 > th dose independent rect. 5 15
159 49.87 radiation 1.0 10 > th dose independent rect. 9 8
160 49.88 atmosphere 995.0 270 > th dose independent rect. 7 8
166 49.91 wind 9.0 270 < th dose dependent rect. 2 5
170 49.92 precipitation 0.1 90 < th dose independent rect. 9 19
171 49.92 precipitation 0.1 90 < th dose dependent rect. 9 19
179 49.96 humidity 50.0 270 > th dose independent rect. 7 19
210 50.10 radiation 1.0 270 > th dose independent rect. 7 8
213 50.11 radiation 40.0 270 < th dose dependent rect. 2 5
214 50.11 radiation 40.0 270 < th dose dependent rect. 2 7
243 50.26 atmosphere 1015.0 90 < th dose independent rect. 20 8
256 50.28 radiation 20.0 30 < th dose dependent sin 22 NA
264 50.30 humidity 80.0 30 > th dose independent rect. 5 15
268 50.31 precipitation 0.1 270 < th dose independent rect. 15 16
271 50.31 precipitation 0.1 270 < th dose dependent rect. 15 16
303 50.37 atmosphere 995.0 270 > th dose independent rect. 15 16
314 50.40 humidity 80.0 270 > th dose independent rect. 3 3
368 50.49 wind 9.0 10 < th dose independent rect. 9 8
390 50.53 wind 1.0 270 > th dose independent rect. 2 5
399 50.55 radiation 20.0 10 < th dose independent rect. 5 17
401 50.56 radiation 1.0 90 > th dose dependent rect. 8 9
409 50.59 humidity 60.0 270 > th dose independent rect. 18 9
414 50.60 temperature 10.0 10 > th dose independent rect. 9 8
416 50.60 atmosphere 1015.0 10 < th dose independent rect. 9 8
417 50.60 precipitation 0.1 10 < th dose independent rect. 9 8
418 50.60 temperature 10.0 10 > th dose independent rect. 17 16
422 50.60 precipitation 0.1 10 < th dose dependent rect. 9 8
429 50.62 radiation 1.0 270 < th dose independent rect. 18 9
448 50.66 humidity 90.0 30 < th dose independent rect. 9 8
466 50.68 atmosphere 995.0 90 > th dose dependent rect. 4 16
472 50.70 wind 1.0 270 > th dose independent rect. 7 8
477 50.71 temperature 30.0 270 < th dose independent rect. 18 9
479 50.71 wind 9.0 10 < th dose independent rect. 17 16
480 50.71 radiation 30.0 10 < th dose independent rect. 17 16
484 50.71 atmosphere 1015.0 10 < th dose dependent rect. 8 9
498 50.73 temperature 10.0 270 > th dose dependent rect. 7 7
500 50.73 radiation 10.0 270 < th dose dependent rect. 18 9
505 50.74 humidity 50.0 270 > th dose dependent rect. 2 5
506 50.74 humidity 50.0 270 > th dose dependent rect. 20 6
547 50.80 temperature 10.0 270 > th dose dependent rect. 2 5
551 50.80 radiation 40.0 90 < th dose dependent rect. 13 22
552 50.81 wind 1.0 10 > th dose independent rect. 9 8
589 50.85 temperature 10.0 270 > th dose independent rect. 18 9
594 50.85 temperature 10.0 270 > th dose independent rect. 3 15
595 50.85 atmosphere 1015.0 270 < th dose independent rect. 3 15
607 50.87 wind 1.0 270 > th dose independent rect. 3 3
626 50.89 wind 9.0 270 < th dose independent rect. 18 9
637 50.90 atmosphere 995.0 10 > th dose independent rect. 17 16
665 50.94 atmosphere 995.0 10 > th dose independent rect. 9 8
666 50.94 atmosphere 995.0 270 > th dose independent rect. 18 9
671 50.95 wind 9.0 90 < th dose independent rect. 20 8
685 50.96 humidity 70.0 90 > th dose dependent rect. 4 16
694 50.97 atmosphere 995.0 270 > th dose independent rect. 7 19
699 50.98 temperature 10.0 90 > th dose independent rect. 20 8
700 50.98 temperature 30.0 90 < th dose independent rect. 20 8
701 50.98 humidity 50.0 90 > th dose independent rect. 20 8
704 50.98 atmosphere 995.0 90 > th dose independent rect. 20 8
705 50.98 radiation 1.0 90 < th dose independent rect. 20 8
710 50.98 precipitation 0.1 270 < th dose independent rect. 18 9
718 50.98 radiation 1.0 90 < th dose dependent rect. 20 8
723 50.98 precipitation 0.1 270 < th dose dependent rect. 18 9
748 51.00 temperature 10.0 30 > th dose dependent rect. 20 21
760 51.02 precipitation 0.1 90 < th dose independent rect. 20 8
762 51.02 humidity 50.0 30 > th dose independent rect. 17 16
765 51.02 wind 1.0 270 > th dose independent rect. 14 17
769 51.02 precipitation 0.1 90 < th dose dependent rect. 20 8
820 51.06 temperature 10.0 270 > th dose dependent rect. 3 3
851 51.11 radiation 1.0 90 > th dose independent rect. 18 13
876 51.13 atmosphere 1015.0 270 < th dose dependent rect. 7 6
890 51.15 radiation 10.0 90 > th dose independent sin 23 NA
904 51.16 temperature 10.0 270 > th dose dependent rect. 20 17
930 51.18 temperature 10.0 10 > th dose dependent rect. 20 9
961 51.24 atmosphere 1015.0 270 < th dose independent rect. 21 16
975 51.26 atmosphere 1005.0 270 > th dose independent rect. 4 2
976 51.26 humidity 50.0 30 > th dose independent rect. 9 8
979 51.26 radiation 40.0 90 < th dose dependent rect. 4 7
989 51.29 radiation 20.0 90 < th dose independent rect. 4 7
991 51.29 precipitation 0.1 10 < th dose independent rect. 17 16
997 51.29 precipitation 0.1 10 < th dose dependent rect. 17 16