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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0632000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.92 (0.0371) R2 : 0.318
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.937 (0.0909) R2dC : 0.167 R2C : 0.0893
β3 : 1.25 (0.113) R2dE : 0.203 R2E : 0.142
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.0797) R2dN8 : 0.00878 R2N8 : 0.0241
σ : 0.693
deviance : 221.37
__
_____
C
peak time of C : 1.35
E
wheather : temperature
threshold : 20.44
memory length : 191
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
217.85 0.693 4.93 -0.365 0.953 1.32 -0.415 -0.0411 0.111 1.45 20.4 195 -- --
217.85 0.687 4.93 -0.358 0.954 1.33 -0.401 -- 0.112 1.45 20.4 194 -- --
218.45 0.688 4.93 -0.329 0.954 1.33 -- 0.0989 0.119 1.39 20.4 194 -- --
218.49 0.688 4.93 -0.343 0.953 1.33 -- -- 0.115 1.39 20.41 194 -- --
247.64 0.733 4.94 -0.446 -- 1.4 -- 0.0522 0.0201 -- 21.3 850 -- --
280.48 0.785 4.87 0.0442 0.715 -- -0.37 -- 0.371 1.15 -- -- -- --
281.02 0.785 4.87 0.0578 0.715 -- -- -- 0.373 1.03 -- -- -- --
247.64 0.733 4.94 -0.435 -- 1.38 -- -- 0.0163 -- 21.29 850 -- --
221.37 0.693 4.92 -- 0.937 1.25 -- -- 0.166 1.35 20.44 191 -- --
312.81 0.826 4.86 0.0847 -- -- -- -- 0.387 -- -- -- -- --
281.1 0.784 4.87 -- 0.716 -- -- -- 0.367 1.03 -- -- -- --
251.9 0.739 4.92 -- -- 1.25 -- -- 0.0928 -- 21.23 780 -- --
313 0.826 4.86 -- -- -- -- -- 0.378 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.37 humidity 80.0 14400 > th dose dependent rect. 13 1
11 216.76 wind 1.0 14400 > th dose dependent rect. 1 1
12 217.07 humidity 90.0 14400 > th dose independent rect. 13 1
13 217.49 wind 9.0 14400 < th dose independent rect. 6 5
15 217.93 wind 9.0 14400 > th dose independent rect. 6 5
18 218.18 humidity 80.0 14400 > th dose independent rect. 15 1
19 218.27 humidity 80.0 14400 > th dose independent rect. 13 3
20 218.61 wind 1.0 43200 > th dose dependent rect. 5 1
22 218.67 temperature 20.0 270 < th dose independent rect. 10 21
23 218.68 wind 5.0 43200 < th dose dependent rect. 5 1
46 220.49 wind 3.0 43200 < th dose dependent rect. 23 7
47 220.54 temperature 20.0 270 > th dose independent sin 11 NA
48 220.58 wind 5.0 43200 < th dose dependent rect. 1 1
51 220.80 wind 9.0 14400 < th dose independent rect. 9 2
61 221.25 wind 3.0 43200 > th dose independent rect. 5 1
63 221.28 wind 3.0 43200 < th dose independent rect. 5 1
64 221.34 temperature 20.0 270 < th dose independent rect. 15 16
72 221.46 humidity 80.0 14400 > th dose independent rect. 10 1
76 221.52 wind 9.0 14400 > th dose independent rect. 9 2
79 221.53 humidity 90.0 14400 < th dose independent rect. 13 1
81 221.63 humidity 80.0 14400 > th dose independent rect. 10 6
85 221.74 humidity 90.0 14400 > th dose dependent rect. 7 1
105 222.01 temperature 20.0 270 < th dose independent sin 11 NA
113 222.16 wind 3.0 14400 < th dose independent rect. 1 1
114 222.16 precipitation 0.1 14400 > th dose independent rect. 17 1
120 222.26 temperature 20.0 270 > th dose independent no NA NA
124 222.31 wind 1.0 14400 > th dose dependent rect. 23 3
126 222.35 humidity 90.0 14400 > th dose independent rect. 7 1
127 222.36 temperature 20.0 270 < th dose independent rect. 17 23
136 222.45 temperature 20.0 270 < th dose independent no NA NA
154 222.72 humidity 80.0 14400 < th dose independent rect. 13 3
159 222.79 wind 3.0 43200 < th dose independent rect. 5 3
160 222.80 wind 9.0 14400 > th dose dependent rect. 6 5
176 223.06 temperature 20.0 270 > th dose independent rect. 14 23
179 223.10 wind 1.0 43200 > th dose dependent rect. 23 7
189 223.21 wind 3.0 43200 > th dose independent rect. 5 3
210 223.51 temperature 20.0 270 > th dose independent rect. 3 23
211 223.52 temperature 20.0 270 < th dose independent rect. 1 23
222 223.60 temperature 20.0 270 > th dose independent rect. 5 23
244 223.87 temperature 20.0 270 > th dose independent rect. 9 23
257 223.95 humidity 80.0 14400 < th dose independent rect. 10 1
258 223.96 temperature 20.0 270 > th dose independent rect. 16 23
273 224.13 wind 3.0 43200 > th dose independent rect. 7 1
282 224.18 wind 9.0 14400 < th dose dependent rect. 23 4
286 224.22 temperature 20.0 270 < th dose independent rect. 23 23
299 224.33 humidity 80.0 14400 < th dose independent rect. 10 6
312 224.46 wind 1.0 43200 > th dose dependent rect. 1 7
343 224.75 precipitation 0.1 14400 < th dose independent rect. 17 1
344 224.75 precipitation 0.1 14400 < th dose dependent rect. 17 1
346 224.76 wind 9.0 14400 > th dose dependent rect. 10 1
374 224.94 wind 3.0 43200 < th dose independent rect. 23 9
378 225.02 temperature 20.0 270 > th dose independent rect. 12 23
382 225.04 wind 3.0 43200 < th dose independent rect. 1 7
407 225.18 wind 3.0 43200 > th dose independent rect. 1 8
416 225.24 wind 3.0 14400 > th dose independent rect. 1 1
421 225.28 temperature 20.0 720 > th dose independent sin 15 NA
445 225.41 temperature 20.0 270 > th dose independent rect. 20 23
452 225.49 temperature 20.0 720 > th dose independent rect. 14 14
463 225.57 wind 3.0 43200 > th dose independent rect. 23 10
477 225.63 temperature 20.0 10 < th dose independent rect. 10 23
502 225.77 temperature 20.0 10 > th dose independent rect. 17 23
507 225.79 temperature 20.0 10 < th dose independent rect. 1 23
512 225.82 temperature 20.0 10 < th dose independent rect. 13 23
544 225.97 temperature 20.0 720 > th dose independent rect. 16 10
551 226.00 temperature 20.0 10 < th dose independent rect. 15 23
552 226.01 temperature 20.0 10 < th dose independent rect. 21 23
558 226.04 temperature 20.0 10 < th dose independent rect. 19 23
559 226.05 temperature 20.0 10 < th dose independent rect. 17 23
564 226.07 temperature 20.0 10 < th dose independent no NA NA
577 226.15 temperature 20.0 10 < th dose independent rect. 5 23
586 226.21 humidity 80.0 14400 > th dose dependent rect. 9 2
592 226.25 temperature 20.0 270 < th dose dependent rect. 10 20
607 226.34 temperature 20.0 10 < th dose independent rect. 23 23
616 226.40 temperature 20.0 10 < th dose independent rect. 3 23
683 226.74 temperature 20.0 10 < th dose independent rect. 7 23
711 226.86 humidity 90.0 14400 < th dose independent rect. 7 1
790 227.14 temperature 20.0 10 < th dose independent rect. 14 19
813 227.25 temperature 20.0 720 > th dose independent rect. 9 19
826 227.33 temperature 20.0 720 < th dose independent sin 16 NA
836 227.38 humidity 90.0 14400 > th dose dependent rect. 3 18
882 227.58 humidity 90.0 14400 > th dose independent rect. 2 21
891 227.61 temperature 20.0 720 > th dose independent rect. 11 17
949 227.81 humidity 80.0 14400 > th dose dependent sin 23 NA
962 227.85 temperature 20.0 270 < th dose dependent sin 10 NA