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Os04g0631800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor-like protein kinase 5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.7 (0.0371) R2 : 0.147
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2 (0.229) R2dE : 0.147 R2E : 0.143
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0919 (0.0785) R2dN8 : 0.00457 R2N8 : -0.000366
σ : 0.696
deviance : 223.45
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C
peak time of C : --
E
wheather : radiation
threshold : 1.65
memory length : 1065
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.7
open length of G : 4.19

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.86 0.652 6.02 0.334 0.476 15.8 -0.83 33.4 0.0565 4.18 1.657 1255 9 3.14
229.17 0.71 5.73 -0.822 0.486 1.07 -0.832 -- -0.0624 3.61 1.677 1040 9.35 3.46
194.61 0.65 6.02 0.34 0.469 15.8 -- 33.3 0.0606 3.75 1.655 1257 9.01 3.13
206.82 0.67 5.7 -0.566 0.454 1.58 -- -- 0.0397 4.11 1.83 1074 10.6 3.48
206.72 0.67 6.03 0.364 -- 16 -- 33.8 0.0712 -- 1.66 1276 9 3.12
230.29 0.711 5.73 -0.835 0.481 -- -0.81 -- -0.0667 3.67 -- -- -- --
232.2 0.714 5.73 -0.823 0.475 -- -- -- -0.0619 3.38 -- -- -- --
217.1 0.686 5.7 -0.535 -- 1.73 -- -- 0.0384 -- 1.8 1071 10.6 4.28
214 0.681 5.7 -- 0.458 1.69 -- -- 0.0913 4.04 1.649 1065 10.6 3.95
244.87 0.731 5.73 -0.803 -- -- -- -- -0.0494 -- -- -- -- --
250.04 0.74 5.71 -- 0.458 -- -- -- 0.0297 3.39 -- -- -- --
223.45 0.696 5.7 -- -- 2 -- -- 0.0919 -- 1.65 1065 10.7 4.19
261.87 0.755 5.71 -- -- -- -- -- 0.0397 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.26 radiation 1.0 1440 < th dose independent rect. 9 3
2 206.26 radiation 1.0 1440 < th dose dependent rect. 9 3
3 206.33 radiation 10.0 720 < th dose dependent rect. 14 10
4 206.55 radiation 20.0 1440 < th dose dependent rect. 11 1
7 206.67 radiation 1.0 1440 > th dose independent rect. 9 4
8 207.02 radiation 1.0 720 < th dose dependent rect. 13 4
13 207.27 humidity 70.0 720 > th dose dependent rect. 19 2
20 207.52 radiation 1.0 1440 > th dose independent rect. 11 1
22 207.61 humidity 50.0 720 > th dose dependent rect. 17 7
29 207.84 humidity 80.0 720 < th dose dependent rect. 15 16
35 207.91 humidity 80.0 720 < th dose dependent rect. 15 7
37 207.97 humidity 80.0 720 < th dose dependent rect. 15 12
52 208.25 wind 7.0 720 < th dose independent rect. 14 13
79 208.71 humidity 80.0 720 < th dose dependent sin 13 NA
91 208.96 radiation 1.0 1440 > th dose independent rect. 9 1
106 209.21 wind 7.0 4320 > th dose independent rect. 17 2
107 209.21 radiation 10.0 720 < th dose dependent sin 16 NA
111 209.25 precipitation 0.1 30 > th dose independent rect. 3 15
122 209.36 radiation 1.0 1440 < th dose independent rect. 13 1
123 209.36 radiation 1.0 1440 < th dose dependent rect. 13 1
127 209.40 precipitation 0.1 30 > th dose dependent rect. 3 15
132 209.43 radiation 10.0 720 < th dose dependent rect. 14 16
139 209.52 wind 7.0 4320 < th dose independent rect. 17 1
140 209.52 radiation 20.0 1440 < th dose dependent rect. 11 3
169 209.73 humidity 90.0 4320 < th dose independent rect. 7 1
170 209.73 radiation 10.0 720 < th dose independent rect. 14 10
173 209.76 humidity 90.0 720 > th dose dependent rect. 20 1
188 209.91 radiation 10.0 4320 < th dose dependent rect. 24 5
210 210.08 radiation 10.0 720 < th dose dependent rect. 11 13
212 210.12 radiation 10.0 4320 < th dose dependent rect. 3 2
264 210.54 precipitation 0.1 30 > th dose independent sin 1 NA
271 210.56 humidity 70.0 720 > th dose independent rect. 17 7
285 210.66 radiation 20.0 1440 < th dose dependent rect. 11 6
287 210.68 radiation 1.0 720 > th dose independent sin 17 NA
289 210.68 humidity 80.0 720 < th dose dependent rect. 18 3
295 210.70 humidity 50.0 720 > th dose dependent sin 15 NA
298 210.71 precipitation 0.1 30 < th dose independent sin 1 NA
299 210.71 precipitation 0.1 30 < th dose dependent sin 1 NA
309 210.77 radiation 1.0 720 < th dose independent sin 16 NA
313 210.78 precipitation 0.1 30 > th dose dependent sin 1 NA
315 210.78 humidity 90.0 720 > th dose dependent rect. 18 6
323 210.81 radiation 20.0 1440 < th dose independent rect. 11 3
331 210.86 wind 7.0 720 < th dose independent rect. 14 8
333 210.87 radiation 1.0 720 < th dose independent rect. 11 18
335 210.88 radiation 20.0 1440 < th dose independent rect. 11 1
338 210.90 humidity 90.0 4320 > th dose independent rect. 6 2
344 210.95 wind 7.0 4320 > th dose dependent rect. 17 2
356 211.00 radiation 10.0 1440 < th dose dependent rect. 9 12
361 211.00 radiation 10.0 1440 < th dose dependent rect. 9 18
379 211.10 humidity 50.0 720 > th dose dependent rect. 14 15
391 211.16 humidity 70.0 720 > th dose independent rect. 17 14
398 211.16 radiation 20.0 1440 < th dose dependent rect. 11 16
417 211.24 humidity 70.0 720 > th dose independent sin 13 NA
465 211.40 humidity 70.0 720 < th dose independent sin 13 NA
474 211.43 humidity 70.0 720 > th dose independent rect. 18 11
484 211.47 radiation 1.0 1440 > th dose independent rect. 4 1
494 211.47 radiation 1.0 1440 > th dose dependent rect. 4 1
507 211.49 humidity 70.0 720 < th dose independent rect. 14 18
512 211.50 radiation 1.0 720 < th dose independent rect. 13 6
522 211.52 radiation 1.0 720 < th dose independent rect. 11 8
530 211.54 radiation 1.0 720 > th dose independent rect. 14 5
574 211.64 wind 1.0 1440 < th dose independent rect. 6 1
596 211.68 wind 7.0 720 > th dose independent rect. 17 5
612 211.78 humidity 70.0 720 > th dose independent rect. 14 10
617 211.79 humidity 70.0 720 < th dose independent rect. 14 6
634 211.81 humidity 80.0 720 > th dose independent rect. 15 6
671 211.91 wind 7.0 720 > th dose independent rect. 17 8
717 212.04 radiation 10.0 4320 < th dose dependent rect. 19 10
725 212.05 humidity 70.0 720 > th dose independent rect. 14 17
767 212.15 atmosphere 1005.0 270 < th dose independent rect. 22 5
778 212.19 radiation 1.0 720 > th dose independent rect. 9 20
789 212.20 wind 5.0 1440 > th dose dependent rect. 14 8
794 212.21 radiation 1.0 720 > th dose independent rect. 9 10
816 212.25 precipitation 0.1 270 > th dose independent rect. 2 2
837 212.27 wind 5.0 1440 > th dose dependent rect. 14 4
853 212.28 wind 7.0 1440 > th dose dependent rect. 15 1
857 212.29 precipitation 0.1 270 > th dose dependent rect. 2 2
916 212.42 humidity 80.0 720 > th dose independent rect. 12 9
955 212.50 wind 9.0 720 > th dose dependent rect. 18 3
967 212.52 wind 7.0 720 > th dose independent rect. 14 15