Os04g0631400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0631400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 246.45 | 0.738 | 7.88 | 2.38 | 0.694 | -3.22 | 0.186 | -1.49 | 0.117 | 18.8 | 10.2 | 709 | -- | -- |
| 248.01 | 0.733 | 7.84 | 2.64 | 0.709 | -3.25 | -0.0941 | -- | 0.189 | 18.7 | 9.836 | 694 | -- | -- |
| 246.53 | 0.731 | 7.87 | 2.4 | 0.693 | -3.22 | -- | -1.37 | 0.123 | 18.8 | 9.974 | 708 | -- | -- |
| 248.03 | 0.733 | 7.84 | 2.64 | 0.711 | -3.25 | -- | -- | 0.189 | 18.7 | 9.922 | 693 | -- | -- |
| 251.22 | 0.738 | 7.85 | 2.6 | -- | -2.58 | -- | -0.77 | 0.16 | -- | -1.899 | 2306 | -- | -- |
| 378.86 | 0.912 | 7.93 | 1.82 | 0.312 | -- | 0.289 | -- | -0.311 | 12.4 | -- | -- | -- | -- |
| 379.18 | 0.912 | 7.93 | 1.83 | 0.313 | -- | -- | -- | -0.31 | 12.7 | -- | -- | -- | -- |
| 251.78 | 0.739 | 7.82 | 2.79 | -- | -2.58 | -- | -- | 0.211 | -- | 4.038 | 2314 | -- | -- |
| 408.21 | 0.941 | 7.94 | -- | 0.631 | -2.16 | -- | -- | -0.248 | 16.8 | 13.02 | 464 | -- | -- |
| 385.31 | 0.917 | 7.94 | 1.82 | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
| 467.33 | 1.01 | 7.98 | -- | 0.285 | -- | -- | -- | -0.513 | 12.4 | -- | -- | -- | -- |
| 415.88 | 0.95 | 7.93 | -- | -- | -1.78 | -- | -- | -0.288 | -- | 8.208 | 876 | -- | -- |
| 472.45 | 1.01 | 7.99 | -- | -- | -- | -- | -- | -0.517 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 2 | 236.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 11 | 238.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 54 | 242.06 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 55 | 242.13 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 64 | 242.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 65 | 242.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 93 | 243.41 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 97 | 243.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 129 | 244.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 172 | 244.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 182 | 244.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 230 | 245.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 248 | 245.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 252 | 245.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 337 | 246.48 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 352 | 246.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 358 | 246.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 399 | 246.86 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 419 | 247.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 515 | 247.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 530 | 247.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 579 | 248.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 583 | 248.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 593 | 248.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 615 | 248.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 718 | 248.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |