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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0631300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0435) R2 : 1.54e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00768 (0.0917) R2dN8 : 1.99e-05 R2N8 : 1.54e-05
σ : 0.82
deviance : 308.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.75 0.816 2.84 0.251 0.318 0.419 0.441 0.977 -0.00768 9.13 3.3 738 -- --
302.88 0.811 2.83 0.278 0.335 0.484 0.196 -- -0.00589 8.92 3.2 865 -- --
302.14 0.81 2.84 0.294 0.306 0.519 -- 0.81 0.0139 9.49 3.482 868 -- --
302.56 0.81 2.83 0.259 0.328 0.508 -- -- -0.00976 9.73 3.1 874 -- --
304.45 0.813 2.85 0.28 -- 0.459 -- 1.03 -0.0156 -- 3 1197 -- --
306.44 0.821 2.83 0.116 0.16 -- 0.281 -- 0.0201 8.4 -- -- -- --
306.69 0.82 2.83 0.125 0.16 -- -- -- 0.0201 8.51 -- -- -- --
305.39 0.814 2.84 0.229 -- 0.454 -- -- -0.0176 -- 2.9 1270 -- --
304.3 0.812 2.83 -- 0.319 0.487 -- -- -0.00756 9.59 3.141 875 -- --
308.12 0.82 2.83 0.126 -- -- -- -- 0.0216 -- -- -- -- --
307.1 0.82 2.83 -- 0.16 -- -- -- 0.00619 8.46 -- -- -- --
306.7 0.816 2.84 -- -- 0.365 -- -- -0.0325 -- 3 1300 -- --
308.53 0.82 2.83 -- -- -- -- -- 0.00768 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 287.99 humidity 50.0 10 < th dose independent rect. 11 1
93 287.99 humidity 50.0 10 < th dose dependent rect. 11 1
185 292.77 radiation 40.0 90 > th dose independent rect. 10 1
186 292.88 wind 5.0 720 > th dose dependent rect. 1 7
187 293.06 wind 5.0 720 > th dose independent rect. 24 9
188 293.07 wind 5.0 720 > th dose independent rect. 1 7
189 293.27 wind 3.0 720 > th dose dependent rect. 24 9
190 293.54 wind 5.0 720 > th dose dependent rect. 1 5
198 294.36 wind 5.0 720 < th dose independent rect. 1 8
200 294.49 temperature 25.0 90 > th dose dependent rect. 2 2
201 294.54 temperature 25.0 90 > th dose independent rect. 1 3
204 294.74 temperature 25.0 90 > th dose dependent rect. 22 1
205 294.76 temperature 25.0 90 > th dose dependent rect. 1 4
216 295.24 temperature 25.0 270 > th dose independent rect. 2 1
253 296.24 temperature 30.0 720 > th dose dependent rect. 18 1
270 296.42 radiation 1.0 43200 < th dose dependent rect. 3 1
272 296.46 wind 5.0 720 < th dose independent rect. 21 14
274 296.55 wind 9.0 90 > th dose dependent rect. 20 15
281 296.63 atmosphere 1000.0 30 > th dose independent rect. 3 23
294 296.83 wind 3.0 720 > th dose dependent sin 7 NA
345 297.06 wind 5.0 720 < th dose independent rect. 21 12
346 297.06 radiation 30.0 90 > th dose dependent rect. 10 1
347 297.08 temperature 25.0 4320 < th dose independent rect. 1 2
362 297.32 precipitation 0.1 1440 > th dose independent rect. 17 1
366 297.34 atmosphere 995.0 30 > th dose dependent rect. 2 12
369 297.35 wind 9.0 90 > th dose independent rect. 20 15
370 297.35 wind 7.0 10 < th dose independent rect. 3 23
395 297.64 temperature 20.0 720 > th dose dependent rect. 5 1
400 297.66 wind 5.0 720 > th dose independent sin 8 NA
402 297.68 wind 5.0 720 < th dose independent sin 7 NA
410 297.71 temperature 25.0 4320 > th dose independent rect. 24 2
413 297.72 precipitation 0.1 30 < th dose independent rect. 3 23
414 297.72 precipitation 0.1 30 < th dose dependent rect. 3 23
425 297.85 radiation 10.0 4320 < th dose independent rect. 13 2
437 297.94 humidity 90.0 30 > th dose independent rect. 2 1
438 297.94 humidity 80.0 30 > th dose dependent rect. 2 1
444 297.97 atmosphere 1000.0 30 > th dose dependent rect. 2 1
446 297.98 wind 5.0 30 < th dose independent rect. 2 1
453 297.99 temperature 10.0 30 > th dose independent rect. 2 1
456 297.99 temperature 30.0 30 < th dose independent rect. 2 1
458 297.99 humidity 50.0 30 > th dose independent rect. 2 1
461 297.99 atmosphere 995.0 30 > th dose independent rect. 2 1
463 297.99 atmosphere 1010.0 30 < th dose independent rect. 2 1
465 297.99 radiation 1.0 30 < th dose independent rect. 2 1
470 297.99 precipitation 0.1 30 < th dose independent rect. 2 1
473 297.99 temperature 10.0 30 > th dose independent rect. 3 23
474 297.99 wind 7.0 30 < th dose dependent rect. 2 1
476 297.99 temperature 30.0 30 < th dose dependent rect. 2 1
477 297.99 radiation 1.0 30 < th dose dependent rect. 2 1
482 297.99 precipitation 0.1 30 < th dose dependent rect. 2 1
488 298.00 wind 5.0 720 > th dose dependent rect. 10 1
492 298.01 temperature 10.0 30 > th dose dependent rect. 2 1
503 298.02 temperature 25.0 270 > th dose dependent rect. 22 7
505 298.04 wind 3.0 270 < th dose independent rect. 3 8
506 298.04 atmosphere 1015.0 30 < th dose dependent rect. 2 1
508 298.06 wind 1.0 30 > th dose independent rect. 2 1
509 298.06 wind 1.0 30 < th dose independent rect. 2 1
528 298.10 atmosphere 1005.0 30 > th dose dependent rect. 2 3
541 298.14 wind 9.0 1440 < th dose independent rect. 3 1
542 298.14 temperature 10.0 1440 > th dose independent rect. 3 1
545 298.14 temperature 30.0 1440 < th dose independent rect. 3 1
550 298.14 humidity 50.0 1440 > th dose independent rect. 3 1
559 298.14 atmosphere 995.0 1440 > th dose independent rect. 3 1
560 298.14 radiation 1.0 1440 < th dose independent rect. 3 1
580 298.14 radiation 10.0 4320 < th dose independent rect. 11 4
582 298.14 temperature 10.0 1440 > th dose independent rect. 4 23
586 298.14 radiation 1.0 1440 < th dose dependent rect. 3 1
664 298.27 temperature 30.0 4320 > th dose dependent rect. 18 1
694 298.28 atmosphere 995.0 10 > th dose dependent rect. 2 14
696 298.29 humidity 50.0 720 < th dose independent rect. 16 1
717 298.37 temperature 25.0 270 > th dose dependent rect. 20 3
731 298.45 wind 3.0 270 > th dose independent rect. 10 1
741 298.47 temperature 25.0 270 > th dose dependent rect. 20 6
754 298.53 wind 3.0 720 < th dose independent rect. 5 4
758 298.54 radiation 10.0 4320 > th dose independent rect. 13 2
762 298.55 temperature 20.0 720 > th dose dependent rect. 3 5
763 298.55 temperature 10.0 720 > th dose dependent rect. 3 6
774 298.59 humidity 50.0 720 < th dose dependent rect. 16 1
782 298.62 wind 9.0 10 > th dose independent rect. 21 14
784 298.62 wind 9.0 10 > th dose dependent rect. 21 14
786 298.62 atmosphere 995.0 30 > th dose dependent rect. 10 19
789 298.63 wind 3.0 270 < th dose independent rect. 4 10
794 298.66 wind 7.0 10 > th dose independent rect. 21 7
803 298.66 wind 7.0 10 > th dose dependent rect. 21 8
822 298.69 wind 7.0 30 > th dose independent rect. 21 1
848 298.69 wind 7.0 30 > th dose dependent rect. 21 1
878 298.70 wind 9.0 90 < th dose independent sin 9 NA
882 298.70 temperature 25.0 270 > th dose dependent rect. 20 9
891 298.72 wind 3.0 720 < th dose independent rect. 1 2
894 298.73 wind 9.0 90 > th dose dependent rect. 18 4
921 298.78 wind 7.0 90 > th dose independent rect. 20 18
922 298.78 wind 1.0 270 > th dose dependent rect. 10 1
936 298.83 temperature 20.0 270 > th dose independent rect. 5 2
948 298.86 wind 7.0 720 > th dose independent rect. 10 1
958 298.87 wind 9.0 90 > th dose dependent sin 9 NA
976 298.90 wind 3.0 270 < th dose dependent rect. 5 9
1000 298.93 atmosphere 995.0 270 > th dose dependent rect. 23 13