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Os04g0631000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.64 (0.0325) R2 : 0.474
β1 : 2.04 (0.123) R2dD : 0.351 R2D : 0.0904
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.28 (0.11) R2dE : 0.17 R2E : 0.0216
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.764 (0.0694) R2dN8 : 0.187 R2N8 : 0.0856
σ : 0.608
deviance : 170.15
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C
peak time of C : --
E
wheather : temperature
threshold : 26.6
memory length : 3959
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.55 0.599 8.63 2.11 0.408 -1.21 0.595 0.293 0.808 15.7 26.4 4783 -- --
162.59 0.594 8.64 2.06 0.401 -1.19 0.552 -- 0.798 15.7 26.4 4794 -- --
163.62 0.596 8.63 2.14 0.412 -1.22 -- 0.349 0.813 15.7 26.4 4775 -- --
163.65 0.596 8.64 2.06 0.407 -1.18 -- -- 0.797 15.7 26.4 4781 -- --
170.15 0.608 8.64 2.09 -- -1.31 -- 0.261 0.772 -- 26.6 3959 -- --
210.08 0.679 8.64 1.66 0.401 -- 0.659 -- 0.797 14.9 -- -- -- --
211.55 0.681 8.63 1.68 0.404 -- -- -- 0.801 14.9 -- -- -- --
170.15 0.608 8.64 2.04 -- -1.28 -- -- 0.764 -- 26.6 3959 -- --
264.28 0.757 8.7 -- 0.298 -0.796 -- -- 0.501 15.4 28.7 3923 -- --
220.95 0.695 8.64 1.66 -- -- -- -- 0.791 -- -- -- -- --
285.71 0.791 8.68 -- 0.371 -- -- -- 0.615 14.9 -- -- -- --
269.35 0.764 8.7 -- -- -0.828 -- -- 0.494 -- 28.7 3934 -- --
293.65 0.8 8.68 -- -- -- -- -- 0.607 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.94 humidity 80.0 14400 > th dose independent rect. 17 1
3 146.31 precipitation 0.1 14400 > th dose independent rect. 8 16
4 146.35 precipitation 0.1 14400 < th dose independent rect. 8 16
5 146.35 precipitation 0.1 14400 < th dose dependent rect. 8 16
30 147.05 humidity 80.0 14400 < th dose independent rect. 16 2
31 147.06 precipitation 0.1 14400 < th dose independent rect. 15 9
32 147.06 precipitation 0.1 14400 < th dose dependent rect. 15 9
33 147.09 precipitation 0.1 14400 > th dose independent rect. 15 9
35 147.14 precipitation 0.1 14400 > th dose dependent rect. 8 19
37 147.18 precipitation 0.1 14400 > th dose dependent rect. 8 16
86 147.73 precipitation 0.1 14400 > th dose dependent rect. 17 10
117 147.95 precipitation 0.1 14400 > th dose dependent rect. 17 7
120 147.96 precipitation 0.1 14400 > th dose dependent rect. 15 9
124 148.01 precipitation 0.1 14400 > th dose dependent rect. 15 12
129 148.03 precipitation 0.1 14400 > th dose dependent rect. 20 22
227 148.75 precipitation 0.1 14400 > th dose independent sin 19 NA
228 148.75 precipitation 0.1 14400 < th dose independent sin 19 NA
229 148.75 precipitation 0.1 14400 < th dose dependent sin 19 NA
231 148.81 precipitation 0.1 14400 > th dose dependent sin 18 NA
238 148.86 wind 3.0 14400 < th dose dependent rect. 2 2
252 149.02 precipitation 0.1 43200 > th dose dependent rect. 19 2
343 150.67 humidity 90.0 14400 < th dose dependent rect. 17 1
351 150.96 wind 9.0 43200 > th dose dependent rect. 18 12
394 151.87 radiation 1.0 43200 < th dose dependent rect. 23 5
395 151.87 precipitation 0.1 14400 > th dose dependent rect. 8 10
411 152.01 precipitation 0.1 14400 > th dose dependent rect. 11 7
413 152.03 precipitation 0.1 14400 < th dose independent rect. 11 7
414 152.03 precipitation 0.1 14400 < th dose dependent rect. 11 7
415 152.04 precipitation 0.1 14400 > th dose independent rect. 11 7
424 152.11 humidity 50.0 14400 > th dose dependent rect. 17 1
425 152.13 precipitation 0.1 14400 > th dose independent rect. 8 10
427 152.15 precipitation 0.1 14400 < th dose independent rect. 8 10
428 152.15 precipitation 0.1 14400 < th dose dependent rect. 8 10
434 152.20 wind 7.0 43200 > th dose dependent rect. 18 3
446 152.29 precipitation 0.1 43200 < th dose independent rect. 17 1
447 152.29 precipitation 0.1 43200 < th dose dependent rect. 17 1
462 152.46 humidity 80.0 14400 > th dose dependent rect. 18 1
475 152.64 precipitation 0.1 43200 > th dose independent rect. 17 1
482 152.71 humidity 70.0 14400 < th dose dependent rect. 16 1
494 152.87 humidity 60.0 14400 > th dose independent rect. 12 7
496 152.94 wind 3.0 43200 > th dose dependent rect. 6 1
500 152.98 precipitation 0.1 14400 < th dose independent rect. 15 3
501 152.98 precipitation 0.1 14400 < th dose dependent rect. 15 3
502 152.99 humidity 60.0 14400 > th dose independent rect. 12 20
513 153.08 precipitation 0.1 14400 > th dose independent rect. 15 3
515 153.10 radiation 1.0 43200 < th dose dependent rect. 1 1
518 153.12 humidity 60.0 14400 > th dose independent rect. 12 11
521 153.12 precipitation 0.1 14400 > th dose dependent rect. 17 23
536 153.23 precipitation 0.1 14400 > th dose dependent rect. 17 21
550 153.32 humidity 60.0 14400 > th dose independent rect. 12 4
563 153.45 precipitation 0.1 14400 > th dose dependent rect. 15 23
576 153.48 precipitation 0.1 14400 > th dose dependent rect. 11 23
578 153.50 humidity 80.0 43200 > th dose independent rect. 23 1
580 153.50 precipitation 0.1 14400 > th dose dependent no NA NA
587 153.55 humidity 60.0 14400 > th dose independent rect. 10 9
589 153.56 humidity 60.0 14400 > th dose independent sin 17 NA
590 153.56 wind 9.0 43200 > th dose independent rect. 18 12
595 153.60 humidity 60.0 14400 > th dose independent rect. 10 22
608 153.70 humidity 60.0 14400 > th dose independent rect. 10 13
610 153.70 humidity 60.0 14400 > th dose independent rect. 10 17
655 153.89 precipitation 0.1 14400 > th dose dependent rect. 17 17
667 153.97 wind 9.0 43200 > th dose independent rect. 19 2
687 154.13 atmosphere 995.0 43200 > th dose independent rect. 12 1
692 154.20 humidity 90.0 14400 < th dose independent rect. 21 1
696 154.24 precipitation 0.1 14400 > th dose dependent rect. 15 3
707 154.31 humidity 80.0 14400 > th dose independent rect. 14 5
711 154.32 wind 9.0 43200 > th dose independent rect. 18 7
722 154.38 wind 9.0 43200 < th dose independent rect. 18 3
725 154.39 wind 9.0 43200 > th dose independent rect. 18 5
741 154.45 wind 9.0 43200 > th dose dependent rect. 18 7
783 154.60 humidity 60.0 14400 < th dose independent rect. 12 7
790 154.62 humidity 80.0 14400 < th dose independent rect. 13 6
804 154.74 humidity 90.0 14400 > th dose independent rect. 21 1
810 154.76 humidity 60.0 14400 < th dose independent rect. 12 20
836 154.89 humidity 60.0 14400 < th dose independent rect. 12 9
865 154.98 humidity 60.0 14400 > th dose independent rect. 20 23
870 155.01 humidity 60.0 14400 > th dose independent rect. 17 23
871 155.02 humidity 60.0 14400 > th dose independent rect. 6 13
885 155.07 wind 7.0 43200 > th dose independent rect. 6 1
893 155.14 humidity 60.0 14400 > th dose independent rect. 5 18
896 155.14 humidity 60.0 14400 > th dose independent rect. 2 22
899 155.15 humidity 60.0 14400 > th dose independent no NA NA
901 155.15 humidity 60.0 14400 > th dose independent rect. 6 16
925 155.15 precipitation 0.1 14400 > th dose independent rect. 20 22
946 155.16 precipitation 0.1 14400 < th dose independent rect. 20 22
950 155.16 precipitation 0.1 14400 < th dose dependent rect. 20 22
956 155.17 humidity 70.0 14400 < th dose dependent rect. 15 17