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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0630600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0572) R2 : 0.467
β1 : 2.53 (0.231) R2dD : 0.178 R2D : 0.157
β2 : 0.0644 (0.136) R2dC : 0.000265 R2C : -0.0201
β3 : 2.6 (0.23) R2dE : 0.165 R2E : 0.15
β4 : 2.17 (0.52) R2dD*C : 0.0209 R2D*C : -0.0132
β5 : 3.39 (0.849) R2dD*E : 0.0244 R2D*E : 0.0888
γ1 : 0.927 (0.124) R2dN8 : 0.0912 R2N8 : 0.00611
σ : 1.07
deviance : 522.57
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_____
C
peak time of C : 23.6
E
wheather : humidity
threshold : 58.33
memory length : 1610
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
522.57 1.07 4.55 2.53 0.0644 2.6 2.17 3.39 0.927 23.6 58.33 1610 -- --
540.8 1.08 4.55 2.95 0.0365 2.81 2.38 -- 0.973 24 56.52 1617 -- --
541.73 1.08 4.57 2.36 0.159 2.44 -- 3.78 0.861 3.43 56.98 1602 -- --
566.3 1.11 4.54 2.81 0.0538 2.79 -- -- 0.982 3.82 58.04 1621 -- --
542.51 1.08 4.56 2.39 -- 2.54 -- 3.84 0.906 -- 58.23 1626 -- --
730.42 1.27 4.58 2.86 0.271 -- 2.14 -- 0.819 0.831 -- -- -- --
745.4 1.28 4.58 2.77 0.402 -- -- -- 0.802 3.92 -- -- -- --
566.39 1.11 4.54 2.81 -- 2.81 -- -- 0.986 -- 58.14 1638 -- --
761.94 1.29 4.55 -- 0.0715 3.8 -- -- 0.947 4.22 77.31 1615 -- --
754.27 1.28 4.58 2.79 -- -- -- -- 0.813 -- -- -- -- --
948.15 1.44 4.65 -- 0.456 -- -- -- 0.494 3.84 -- -- -- --
762.07 1.29 4.55 -- -- 3.85 -- -- 0.951 -- 76.69 1622 -- --
959.61 1.45 4.65 -- -- -- -- -- 0.504 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 512.87 wind 3.0 43200 > th dose dependent rect. 6 2
2 514.84 humidity 80.0 1440 > th dose independent rect. 6 16
3 514.88 humidity 80.0 1440 < th dose independent rect. 7 14
6 514.98 wind 1.0 43200 > th dose dependent rect. 24 10
10 515.41 humidity 70.0 14400 < th dose independent rect. 18 2
13 515.81 humidity 80.0 1440 < th dose independent rect. 7 8
16 516.00 wind 9.0 43200 < th dose dependent rect. 24 10
34 517.37 wind 1.0 43200 > th dose dependent rect. 3 5
52 517.83 wind 5.0 43200 < th dose dependent rect. 2 5
57 517.98 humidity 70.0 14400 > th dose independent rect. 18 2
74 518.48 humidity 70.0 14400 < th dose independent rect. 18 14
103 519.02 humidity 80.0 1440 > th dose independent rect. 7 8
130 519.47 humidity 80.0 1440 < th dose independent sin 1 NA
134 519.52 precipitation 0.1 43200 < th dose independent rect. 19 2
135 519.52 precipitation 0.1 43200 < th dose dependent rect. 19 2
143 519.80 humidity 80.0 1440 > th dose independent sin 1 NA
156 520.04 precipitation 0.1 43200 > th dose independent rect. 19 2
161 520.20 humidity 70.0 14400 > th dose independent rect. 18 13
164 520.23 temperature 30.0 14400 < th dose independent rect. 14 22
166 520.25 wind 3.0 43200 > th dose independent rect. 4 2
174 520.47 humidity 70.0 14400 > th dose independent rect. 18 5
179 520.50 temperature 25.0 14400 > th dose dependent rect. 19 1
185 520.56 humidity 70.0 14400 > th dose independent rect. 18 9
186 520.57 temperature 30.0 14400 > th dose independent rect. 14 22
195 520.68 humidity 60.0 1440 > th dose dependent rect. 6 20
197 520.70 temperature 25.0 14400 > th dose dependent rect. 19 4
199 520.81 wind 3.0 43200 < th dose independent rect. 3 3
209 520.98 wind 3.0 43200 > th dose independent rect. 3 6
224 521.27 temperature 30.0 14400 > th dose dependent rect. 12 4
240 521.52 temperature 30.0 14400 > th dose dependent rect. 10 9
256 521.55 temperature 30.0 14400 > th dose dependent rect. 17 23
297 521.67 temperature 30.0 14400 > th dose dependent sin 21 NA
302 521.69 precipitation 0.1 43200 > th dose dependent rect. 19 2
328 521.76 temperature 30.0 14400 > th dose dependent no NA NA
442 521.81 temperature 30.0 14400 > th dose dependent rect. 14 23
443 521.82 wind 3.0 43200 > th dose independent rect. 3 8
513 522.25 temperature 30.0 14400 < th dose independent rect. 16 1
518 522.29 temperature 30.0 14400 > th dose independent rect. 10 2
528 522.34 temperature 30.0 14400 < th dose independent rect. 10 1
564 522.58 temperature 30.0 14400 < th dose independent rect. 18 23
583 522.61 temperature 30.0 14400 > th dose independent rect. 18 23
596 522.73 temperature 25.0 14400 > th dose dependent rect. 18 15
618 522.98 temperature 30.0 14400 < th dose independent sin 11 NA
620 523.01 temperature 30.0 14400 < th dose independent rect. 14 3
626 523.06 temperature 30.0 14400 > th dose independent rect. 9 8
635 523.14 temperature 30.0 14400 < th dose independent rect. 9 8
636 523.15 wind 3.0 43200 < th dose independent rect. 3 5
637 523.15 temperature 30.0 14400 < th dose independent rect. 5 12
639 523.15 temperature 30.0 14400 < th dose independent rect. 2 15
641 523.15 temperature 30.0 14400 < th dose independent rect. 22 19
643 523.16 temperature 30.0 14400 < th dose independent rect. 7 10
648 523.16 temperature 30.0 14400 < th dose independent rect. 20 21
649 523.17 temperature 30.0 14400 > th dose independent rect. 15 2
673 523.21 temperature 30.0 14400 < th dose independent rect. 14 18
676 523.22 temperature 30.0 14400 < th dose independent rect. 14 5
677 523.22 temperature 30.0 14400 < th dose independent rect. 14 7
681 523.24 temperature 30.0 14400 < th dose independent rect. 14 9
683 523.24 temperature 30.0 14400 < th dose independent rect. 14 13
755 523.33 temperature 30.0 14400 < th dose independent no NA NA
783 523.33 temperature 30.0 14400 < th dose independent rect. 9 23
797 523.34 temperature 30.0 14400 < th dose independent rect. 9 18
803 523.34 temperature 30.0 14400 < th dose independent rect. 9 21
836 523.37 temperature 30.0 14400 > th dose independent no NA NA
930 523.39 temperature 30.0 14400 < th dose independent rect. 18 18
961 523.51 temperature 30.0 14400 > th dose independent sin 11 NA
964 523.53 temperature 30.0 14400 > th dose independent sin 1 NA
970 523.55 temperature 30.0 14400 > th dose independent rect. 14 5
985 523.55 humidity 60.0 1440 > th dose dependent rect. 1 21
986 523.56 temperature 30.0 14400 < th dose independent sin 1 NA