Os04g0630500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0630500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.36 | 0.439 | 11 | -0.396 | 0.122 | -1.88 | -0.497 | -0.0344 | -0.0432 | 13.6 | 26.68 | 114 | -- | -- |
| 87.25 | 0.435 | 11 | -0.394 | 0.12 | -1.87 | -0.501 | -- | -0.0393 | 13.1 | 26.79 | 131 | -- | -- |
| 87.93 | 0.437 | 11 | -0.477 | 0.141 | -1.84 | -- | 0.371 | -0.0538 | 15 | 26.77 | 113 | -- | -- |
| 88.08 | 0.437 | 11 | -0.41 | 0.163 | -1.85 | -- | -- | -0.0378 | 14.7 | 26.5 | 131 | -- | -- |
| 88.63 | 0.438 | 11 | -0.482 | -- | -1.91 | -- | 0.394 | -0.0734 | -- | 27.16 | 107 | -- | -- |
| 136.27 | 0.547 | 10.9 | 0.0611 | 0.612 | -- | -0.337 | -- | 0.366 | 14.9 | -- | -- | -- | -- |
| 136.65 | 0.547 | 10.9 | 0.0534 | 0.612 | -- | -- | -- | 0.364 | 14.9 | -- | -- | -- | -- |
| 88.85 | 0.439 | 11 | -0.44 | -- | -1.95 | -- | -- | -0.0653 | -- | 27.07 | 111 | -- | -- |
| 92.03 | 0.447 | 11 | -- | 0.233 | -1.68 | -- | -- | 0.0399 | 14.8 | 26.22 | 131 | -- | -- |
| 158.2 | 0.588 | 10.9 | 0.0273 | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
| 136.72 | 0.547 | 10.9 | -- | 0.611 | -- | -- | -- | 0.358 | 14.9 | -- | -- | -- | -- |
| 93.73 | 0.451 | 11 | -- | -- | -1.88 | -- | -- | 0.0125 | -- | 27.07 | 111 | -- | -- |
| 158.22 | 0.587 | 10.9 | -- | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.46 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 5 | 82.40 | temperature | 20 | 90 | > th | dose dependent | sin | 8 | NA |
| 8 | 84.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 11 | 84.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 15 | 84.93 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 25 | 86.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 26 | 86.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 33 | 87.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 49 | 87.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 52 | 87.81 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 85 | 88.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 119 | 89.55 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 121 | 89.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 170 | 90.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 195 | 91.30 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 220 | 91.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 250 | 91.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 269 | 92.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 290 | 92.53 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 373 | 93.55 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 396 | 93.86 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 443 | 94.16 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 446 | 94.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 597 | 95.56 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 22 |
| 698 | 96.54 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 719 | 96.74 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 820 | 97.46 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 822 | 97.47 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 826 | 97.51 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 832 | 97.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 836 | 97.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 839 | 97.61 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 851 | 97.68 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 21 |
| 861 | 97.74 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 872 | 97.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 897 | 97.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 906 | 97.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 910 | 97.95 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 945 | 98.11 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |
| 955 | 98.15 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |