Os04g0630400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os04g0630400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.58 | 0.624 | 11 | -3.88 | 0.902 | 1.65 | -1.27 | -2.76 | 0.25 | 20.5 | 0.1792 | 15612 | -- | -- |
| 184.21 | 0.632 | 11 | -3.51 | 0.877 | 2.29 | -1.55 | -- | 0.21 | 20.5 | 0.1799 | 15667 | -- | -- |
| 181.46 | 0.627 | 11 | -3.86 | 0.854 | 1.64 | -- | -3.02 | 0.24 | 20.5 | 0.1799 | 15556 | -- | -- |
| 191.49 | 0.645 | 11 | -3.46 | 0.914 | 2.3 | -- | -- | 0.213 | 20.3 | 0.17 | 15669 | -- | -- |
| 214.82 | 0.683 | 11.1 | -3.91 | -- | 2.21 | -- | -2.59 | 0.134 | -- | 0.314 | 15359 | -- | -- |
| 283.46 | 0.789 | 10.8 | -2.3 | 1.06 | -- | -1.45 | -- | 0.845 | 20.7 | -- | -- | -- | -- |
| 290.42 | 0.798 | 10.8 | -2.25 | 1.06 | -- | -- | -- | 0.845 | 20.7 | -- | -- | -- | -- |
| 218.18 | 0.688 | 11 | -3.58 | -- | 2.9 | -- | -- | 0.161 | -- | 0.17 | 13922 | -- | -- |
| 409.09 | 0.942 | 10.8 | -- | 0.792 | 1.38 | -- | -- | 0.964 | 19.5 | 1.489 | 11194 | -- | -- |
| 354.29 | 0.88 | 10.8 | -2.25 | -- | -- | -- | -- | 0.836 | -- | -- | -- | -- | -- |
| 424.23 | 0.963 | 10.8 | -- | 1.07 | -- | -- | -- | 1.1 | 20.6 | -- | -- | -- | -- |
| 434.08 | 0.97 | 10.8 | -- | -- | 1.7 | -- | -- | 0.808 | -- | 1.48 | 10966 | -- | -- |
| 488.41 | 1.03 | 10.8 | -- | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 174.26 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 3 | 174.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 4 | 174.29 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 5 | 174.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 11 | 174.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 12 | 174.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 17 | 174.54 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 18 | 174.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 38 | 175.59 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 39 | 175.64 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 46 | 175.71 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 50 | 175.77 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 58 | 175.85 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 62 | 175.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 63 | 175.89 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 73 | 175.93 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 81 | 176.03 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 89 | 176.17 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 95 | 176.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 96 | 176.23 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 103 | 176.31 | radiation | 30 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 110 | 176.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 123 | 176.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 129 | 176.54 | radiation | 30 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 145 | 176.66 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 150 | 176.69 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 156 | 176.71 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 162 | 176.73 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 163 | 176.74 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 201 | 176.98 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 202 | 176.99 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 212 | 177.04 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 220 | 177.10 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 224 | 177.13 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 233 | 177.21 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 255 | 177.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 293 | 177.58 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 295 | 177.60 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 300 | 177.65 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 308 | 177.69 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 333 | 177.80 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 346 | 177.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 349 | 177.88 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 366 | 178.03 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 368 | 178.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 374 | 178.07 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 376 | 178.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 388 | 178.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 391 | 178.13 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 394 | 178.14 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 409 | 178.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 410 | 178.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 8 |
| 411 | 178.16 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 422 | 178.18 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 429 | 178.20 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 443 | 178.24 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 453 | 178.26 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 465 | 178.29 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 490 | 178.38 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 494 | 178.39 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 537 | 178.50 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 539 | 178.50 | wind | 9 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 555 | 178.57 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 570 | 178.61 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 572 | 178.61 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 594 | 178.66 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 618 | 178.71 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 632 | 178.74 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 651 | 178.78 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 660 | 178.79 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 663 | 178.80 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 19 |
| 691 | 178.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 18 |
| 692 | 178.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 20 |
| 773 | 179.02 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 804 | 179.11 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 812 | 179.14 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 822 | 179.15 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 0 | NA |
| 832 | 179.16 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 833 | 179.17 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 0 | NA |
| 867 | 179.22 | radiation | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 879 | 179.24 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 918 | 179.31 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 921 | 179.32 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 929 | 179.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 931 | 179.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 938 | 179.35 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 6 | 4 |