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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0630300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.52 (0.059) R2 : 0.194
β1 : -2.31 (0.252) R2dD : 0.244 R2D : 0.0136
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.81 (0.253) R2dE : 0.109 R2E : 0.000602
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.94 (1.5) R2dD*E : 0.0983 R2D*E : -0.114
γ1 : -0.575 (0.133) R2dN8 : 0.0494 R2N8 : -0.0589
σ : 1.05
deviance : 506.79
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.6
memory length : 38
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.00605
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
486.65 1.04 3.54 -2.64 0.683 2.06 -2.02 -9.15 -0.653 18 22.6 40 0.484 --
529.07 1.07 3.41 -1.49 0.521 1.38 -1.62 -- -0.269 16.3 22.81 40 0.563 --
494.68 1.04 3.52 -2.48 0.547 2.02 -- -9.17 -0.604 17.6 23.3 38 0.486 --
535.19 1.08 3.42 -1.55 0.646 1.51 -- -- -0.294 17.6 22.12 39 0.155 --
506.79 1.05 3.52 -2.31 -- 1.81 -- -8.94 -0.575 -- 23.6 38 0.00605 --
559.5 1.11 3.34 -1.29 0.491 -- -1.22 -- -0.0312 13.8 -- -- -- --
564.96 1.11 3.34 -1.33 0.491 -- -- -- -0.0395 13.2 -- -- -- --
545.35 1.09 3.39 -1.49 -- 1.3 -- -- -0.232 -- 23.85 26 6.95e-06 --
594.78 1.14 3.35 -- 0.414 1.11 -- -- -0.0395 16.7 23.3 36 0.353 --
579.9 1.13 3.35 -1.35 -- -- -- -- -0.0493 -- -- -- -- --
611.87 1.16 3.31 -- 0.514 -- -- -- 0.109 13.3 -- -- -- --
602.62 1.15 3.35 -- -- 1.11 -- -- -0.0385 -- 23.99 26 2.59e-07 --
628.18 1.17 3.32 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 494.72 temperature 25 30 < th dose independent rect. 19 22
8 496.85 temperature 25 30 < th dose independent rect. 5 12
16 498.29 temperature 25 90 < th dose independent rect. 23 17
19 498.94 temperature 20 30 > th dose dependent sin 5 NA
23 499.62 temperature 25 30 > th dose independent sin 4 NA
44 502.46 temperature 25 90 < th dose independent sin 5 NA
66 504.56 temperature 25 10 > th dose independent rect. 7 5
67 504.56 temperature 25 30 > th dose independent rect. 3 9
73 504.80 temperature 30 10 < th dose dependent rect. 18 23
80 505.55 temperature 20 30 > th dose dependent rect. 21 15
91 506.26 temperature 30 10 < th dose dependent sin 5 NA
99 506.60 temperature 20 30 > th dose dependent rect. 1 11
116 507.06 temperature 25 270 > th dose dependent rect. 24 9
136 507.99 temperature 25 270 > th dose dependent rect. 7 1
137 508.06 temperature 25 270 > th dose dependent rect. 22 11
143 508.20 temperature 20 10 > th dose dependent rect. 6 23
149 508.55 temperature 25 10 > th dose independent rect. 3 13
189 509.67 temperature 25 270 > th dose dependent rect. 6 3
197 509.80 temperature 20 10 > th dose dependent rect. 17 23
212 510.44 temperature 20 90 > th dose dependent rect. 13 23
224 510.80 temperature 20 10 > th dose dependent rect. 21 23
235 511.02 temperature 30 10 < th dose dependent rect. 5 12
249 511.23 temperature 20 10 > th dose dependent no NA NA
250 511.26 temperature 25 10 > th dose independent rect. 22 18
251 511.27 temperature 25 10 > th dose independent rect. 22 14
261 511.39 temperature 30 90 < th dose dependent rect. 23 17
262 511.40 temperature 20 10 > th dose dependent rect. 1 23
281 511.65 temperature 20 10 > th dose dependent rect. 4 23
284 511.67 temperature 20 10 > th dose dependent rect. 8 23
288 511.70 temperature 20 90 > th dose dependent rect. 15 23
294 511.91 temperature 25 10 < th dose independent rect. 22 23
340 512.65 temperature 20 10 > th dose dependent rect. 15 23
399 513.51 temperature 30 10 < th dose dependent rect. 23 22
436 514.12 temperature 30 90 < th dose dependent rect. 23 22
447 514.29 temperature 25 10 > th dose independent rect. 19 21
494 514.91 humidity 50 43200 < th dose independent rect. 16 2
519 515.19 temperature 20 10 > th dose dependent rect. 6 18
524 515.38 temperature 20 30 > th dose dependent rect. 17 19
536 515.46 temperature 30 90 < th dose dependent rect. 11 23
537 515.47 humidity 50 43200 > th dose independent rect. 16 2
570 515.79 temperature 25 270 > th dose independent rect. 6 3
589 515.99 temperature 30 30 < th dose dependent rect. 9 23
638 516.53 temperature 30 10 < th dose dependent rect. 23 18
641 516.57 temperature 20 10 > th dose dependent rect. 11 23
648 516.62 temperature 30 10 < th dose dependent rect. 13 23
664 516.76 humidity 50 43200 > th dose independent rect. 16 8
668 516.77 temperature 25 270 > th dose independent rect. 18 22
703 517.05 temperature 25 90 < th dose independent rect. 11 23
746 517.41 temperature 20 10 > th dose dependent rect. 21 19
772 517.64 temperature 25 270 > th dose independent rect. 13 23
780 517.68 humidity 50 43200 < th dose independent rect. 16 18
816 517.98 humidity 80 30 < th dose independent rect. 8 10
885 518.48 temperature 25 10 > th dose independent rect. 19 17
889 518.52 temperature 25 10 > th dose independent rect. 21 23
920 518.77 temperature 25 10 > th dose independent rect. 1 23
929 518.84 temperature 30 10 < th dose dependent no NA NA
942 518.97 temperature 25 10 > th dose independent rect. 4 20
969 519.13 temperature 20 720 > th dose dependent rect. 21 9
979 519.23 temperature 30 10 < th dose dependent rect. 5 23
984 519.30 temperature 25 270 < th dose independent rect. 9 23
1000 519.39 humidity 50 43200 < th dose dependent rect. 16 1