Os04g0630100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os04g0630100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 251.16 | 0.745 | 6.26 | -1.34 | 0.54 | -3.22 | 0.715 | 2.73 | 0.192 | 10.8 | 24.2 | 1593 | -- | -- |
| 246.07 | 0.731 | 6.18 | -0.431 | 0.677 | -3.06 | 0.932 | -- | 0.318 | 10.5 | 23.3 | 1973 | -- | -- |
| 250.11 | 0.737 | 6.27 | -1.43 | 0.509 | -3.04 | -- | 2.35 | 0.183 | 10.6 | 23.76 | 1706 | -- | -- |
| 248.63 | 0.734 | 6.18 | -0.35 | 0.593 | -3.01 | -- | -- | 0.364 | 11.1 | 23.27 | 1848 | -- | -- |
| 265.91 | 0.759 | 6.28 | -1.11 | -- | -3.01 | -- | 1.97 | 0.121 | -- | 23.72 | 1633 | -- | -- |
| 627.02 | 1.17 | 5.89 | 0.847 | 0.47 | -- | 0.968 | -- | 1.65 | 10.1 | -- | -- | -- | -- |
| 629.61 | 1.18 | 5.89 | 0.891 | 0.477 | -- | -- | -- | 1.66 | 11.3 | -- | -- | -- | -- |
| 267.2 | 0.761 | 6.18 | -0.339 | -- | -2.97 | -- | -- | 0.381 | -- | 23.29 | 1727 | -- | -- |
| 251.56 | 0.739 | 6.16 | -- | 0.589 | -2.92 | -- | -- | 0.434 | 11.1 | 23.25 | 1840 | -- | -- |
| 643.85 | 1.19 | 5.9 | 0.879 | -- | -- | -- | -- | 1.65 | -- | -- | -- | -- | -- |
| 650.52 | 1.19 | 5.91 | -- | 0.468 | -- | -- | -- | 1.56 | 11.2 | -- | -- | -- | -- |
| 269.96 | 0.765 | 6.17 | -- | -- | -2.89 | -- | -- | 0.448 | -- | 23.28 | 1727 | -- | -- |
| 664.22 | 1.2 | 5.92 | -- | -- | -- | -- | -- | 1.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.35 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 3 | 257.14 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 16 | 258.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 17 | 258.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 20 | 258.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 25 | 258.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 28 | 259.40 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 56 | 261.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 59 | 261.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 60 | 261.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 68 | 261.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 76 | 261.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 94 | 262.50 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 111 | 262.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 20 |
| 130 | 263.37 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 146 | 263.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 166 | 264.24 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 173 | 264.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 294 | 265.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 301 | 266.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 22 |
| 340 | 267.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 21 |
| 363 | 267.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 364 | 267.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 374 | 267.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 419 | 267.44 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 428 | 267.49 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 13 |
| 449 | 267.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 16 |
| 455 | 267.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 461 | 268.07 | temperature | 25 | 4320 | < th | dose dependent | sin | 9 | NA |
| 535 | 269.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 590 | 269.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 594 | 269.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 625 | 270.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 635 | 270.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 19 |
| 644 | 270.52 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 646 | 270.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 711 | 271.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 721 | 271.19 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 743 | 271.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 782 | 271.49 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 872 | 272.24 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 874 | 272.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 876 | 272.28 | radiation | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 937 | 272.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 947 | 272.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 975 | 272.91 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |