Os04g0628200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase, plant/fungal/bacterial family protein.
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Os04g0628200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase, plant/fungal/bacterial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.82 | 0.605 | 6.53 | 0.106 | 0.777 | 1.48 | 0.405 | -3.1 | 0.0807 | 18.2 | 26 | 78 | -- | -- |
| 168.5 | 0.605 | 6.5 | 0.412 | 0.768 | 1.24 | 0.119 | -- | 0.141 | 18.1 | 25.75 | 85 | -- | -- |
| 166.19 | 0.6 | 6.53 | 0.118 | 0.773 | 1.49 | -- | -2.88 | 0.0856 | 18.2 | 26 | 78 | -- | -- |
| 168.54 | 0.605 | 6.5 | 0.41 | 0.776 | 1.22 | -- | -- | 0.143 | 18.1 | 25.73 | 83 | -- | -- |
| 185.65 | 0.635 | 6.54 | 0.0132 | -- | 1.85 | -- | -2.14 | -0.0422 | -- | 24.5 | 217 | -- | -- |
| 191.63 | 0.649 | 6.49 | 0.6 | 1.18 | -- | 0.623 | -- | 0.2 | 17.2 | -- | -- | -- | -- |
| 192.61 | 0.65 | 6.49 | 0.6 | 1.18 | -- | -- | -- | 0.203 | 17.2 | -- | -- | -- | -- |
| 187.7 | 0.638 | 6.51 | 0.29 | -- | 1.68 | -- | -- | 0.0144 | -- | 24.31 | 217 | -- | -- |
| 172.82 | 0.612 | 6.51 | -- | 0.731 | 1.32 | -- | -- | 0.0921 | 18.2 | 25.7 | 89 | -- | -- |
| 265.62 | 0.762 | 6.47 | 0.558 | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
| 202.09 | 0.665 | 6.5 | -- | 1.17 | -- | -- | -- | 0.136 | 17.2 | -- | -- | -- | -- |
| 189.89 | 0.642 | 6.52 | -- | -- | 1.72 | -- | -- | -0.0216 | -- | 24.3 | 217 | -- | -- |
| 273.84 | 0.772 | 6.49 | -- | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.45 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 12 | 164.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 22 | 165.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 24 | 165.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 33 | 165.40 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 60 | 166.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 170 | 167.31 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 179 | 167.39 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 200 | 167.60 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 270 | 168.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 375 | 168.95 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 384 | 169.05 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 411 | 169.38 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 420 | 169.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 445 | 169.79 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 473 | 170.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 516 | 170.51 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 527 | 170.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 560 | 170.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 617 | 171.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 634 | 171.07 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 665 | 171.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 687 | 171.31 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 731 | 171.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 742 | 171.67 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 751 | 171.76 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 14 |
| 760 | 171.81 | wind | 5 | 720 | < th | dose independent | rect. | 7 | 4 |
| 798 | 172.04 | wind | 5 | 720 | > th | dose independent | rect. | 7 | 2 |
| 853 | 172.30 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 867 | 172.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 875 | 172.40 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 912 | 172.53 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 10 |
| 916 | 172.55 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 8 |
| 919 | 172.57 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 12 |
| 923 | 172.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 925 | 172.59 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 992 | 172.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 1000 | 172.89 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |