Os04g0627400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAK-box/P21-Rho-binding domain containing protein.
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Os04g0627400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAK-box/P21-Rho-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 435.09 | 0.98 | 4.11 | -1.49 | 1.78 | -0.907 | -1.17 | -1.06 | 0.121 | 10.2 | 1012 | 4911 | -- | -- |
| 436.64 | 0.973 | 4.13 | -1.62 | 1.79 | -0.805 | -1.19 | -- | 0.114 | 10.2 | 1012 | 3590 | -- | -- |
| 438.16 | 0.975 | 4.09 | -1.45 | 1.8 | -0.845 | -- | -1.53 | 0.139 | 10.2 | 1012 | 8282 | -- | -- |
| 441.04 | 0.978 | 4.14 | -1.76 | 1.8 | -0.606 | -- | -- | 0.0359 | 10.3 | 1012 | 12899 | -- | -- |
| 635.33 | 1.17 | 4.14 | -1.52 | -- | -0.721 | -- | -1.07 | 0.133 | -- | 1012 | 8989 | -- | -- |
| 456.81 | 1 | 4.1 | -1.47 | 1.79 | -- | -1.16 | -- | 0.246 | 10.1 | -- | -- | -- | -- |
| 462.18 | 1.01 | 4.1 | -1.51 | 1.79 | -- | -- | -- | 0.243 | 10.1 | -- | -- | -- | -- |
| 636.82 | 1.18 | 4.2 | -1.79 | -- | -0.619 | -- | -- | 0.0241 | -- | 1012 | 12800 | -- | -- |
| 517.42 | 1.06 | 4.08 | -- | 1.81 | -0.298 | -- | -- | 0.316 | 10.2 | 1011 | 12589 | -- | -- |
| 656.83 | 1.2 | 4.15 | -1.54 | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
| 522.42 | 1.07 | 4.06 | -- | 1.8 | -- | -- | -- | 0.411 | 10.2 | -- | -- | -- | -- |
| 713.99 | 1.24 | 4.13 | -- | -- | -0.388 | -- | -- | 0.308 | -- | 1011 | 15798 | -- | -- |
| 719.06 | 1.25 | 4.11 | -- | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 420.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 2 | 421.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 3 | 421.49 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 10 | 422.98 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 14 | 423.31 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 15 | 423.33 | humidity | 80 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 19 | 423.68 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 27 | 424.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 28 | 424.18 | humidity | 80 | 43200 | > th | dose dependent | sin | 6 | NA |
| 99 | 425.70 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 135 | 426.26 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 21 |
| 154 | 426.48 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 21 |
| 207 | 426.99 | wind | 1 | 14400 | < th | dose independent | sin | 23 | NA |
| 216 | 427.08 | wind | 1 | 14400 | > th | dose independent | sin | 23 | NA |
| 217 | 427.09 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 221 | 427.12 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 239 | 427.25 | wind | 1 | 14400 | < th | dose dependent | rect. | 7 | 7 |
| 244 | 427.31 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 259 | 427.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 296 | 427.61 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 304 | 427.69 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 339 | 427.87 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 347 | 427.91 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 352 | 427.95 | humidity | 90 | 43200 | < th | dose independent | sin | 7 | NA |
| 405 | 428.20 | wind | 1 | 14400 | < th | dose dependent | rect. | 7 | 5 |
| 428 | 428.34 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 434 | 428.40 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 437 | 428.41 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 444 | 428.43 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 450 | 428.45 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 475 | 428.53 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 496 | 428.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 542 | 428.84 | temperature | 25 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 543 | 428.87 | temperature | 30 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 575 | 429.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 594 | 429.04 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 596 | 429.05 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 600 | 429.05 | temperature | 25 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 648 | 429.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 21 |
| 654 | 429.13 | wind | 1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 710 | 429.24 | temperature | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 711 | 429.24 | temperature | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 791 | 429.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 828 | 429.46 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 848 | 429.50 | temperature | 30 | 43200 | > th | dose dependent | sin | 13 | NA |
| 886 | 429.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 907 | 429.65 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 937 | 429.68 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 938 | 429.68 | temperature | 25 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 965 | 429.73 | temperature | 30 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 966 | 429.73 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 21 |