Os04g0627300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0627300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.2 | 0.444 | 3.26 | 0.00124 | 0.242 | 0.814 | -0.36 | 0.411 | -0.055 | 8.62 | 19.5 | 3602 | -- | -- |
| 89.37 | 0.44 | 3.24 | 0.0639 | 0.249 | 0.785 | -0.357 | -- | -0.0481 | 8.6 | 19 | 3536 | -- | -- |
| 89.61 | 0.441 | 3.26 | -0.000115 | 0.24 | 0.815 | -- | 0.385 | -0.0516 | 8.7 | 19.5 | 3619 | -- | -- |
| 89.72 | 0.441 | 3.24 | 0.0444 | 0.248 | 0.775 | -- | -- | -0.0511 | 8.83 | 19 | 3537 | -- | -- |
| 92.92 | 0.449 | 3.26 | 0.00631 | -- | 0.844 | -- | 0.422 | -0.0449 | -- | 19.54 | 3619 | -- | -- |
| 97.63 | 0.463 | 3.28 | -0.346 | 0.262 | -- | -0.308 | -- | -0.213 | 8.95 | -- | -- | -- | -- |
| 97.96 | 0.463 | 3.28 | -0.357 | 0.262 | -- | -- | -- | -0.213 | 9.05 | -- | -- | -- | -- |
| 93.12 | 0.449 | 3.25 | 0.0531 | -- | 0.737 | -- | -- | -0.0344 | -- | 19.66 | 3634 | -- | -- |
| 89.75 | 0.441 | 3.25 | -- | 0.248 | 0.743 | -- | -- | -0.0621 | 8.82 | 18.95 | 3537 | -- | -- |
| 101.92 | 0.472 | 3.29 | -0.357 | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
| 101.31 | 0.471 | 3.27 | -- | 0.262 | -- | -- | -- | -0.174 | 9.15 | -- | -- | -- | -- |
| 93.17 | 0.45 | 3.25 | -- | -- | 0.705 | -- | -- | -0.046 | -- | 19.64 | 3618 | -- | -- |
| 105.28 | 0.479 | 3.28 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.86 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 2 | 88.22 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 3 | 88.22 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 4 | 88.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 18 | 88.48 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 20 | 88.55 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 21 | 88.55 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 31 | 88.72 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 7 |
| 33 | 88.75 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 34 | 88.75 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 36 | 88.75 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 53 | 88.91 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 56 | 88.95 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 58 | 88.95 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 60 | 88.98 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 65 | 89.02 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 69 | 89.06 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 86 | 89.23 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 91 | 89.25 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 18 |
| 102 | 89.27 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 141 | 89.34 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 153 | 89.36 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 175 | 89.38 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 184 | 89.39 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 207 | 89.41 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 218 | 89.44 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 222 | 89.44 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 262 | 89.47 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 268 | 89.48 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 274 | 89.48 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 302 | 89.49 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 333 | 89.50 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 336 | 89.51 | radiation | 1.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 343 | 89.51 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 372 | 89.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 373 | 89.55 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 384 | 89.57 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 430 | 89.57 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 467 | 89.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 474 | 89.60 | radiation | 1.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 491 | 89.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 492 | 89.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 501 | 89.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 508 | 89.62 | atmosphere | 1015.0 | 43200 | > th | dose dependent | sin | 20 | NA |
| 658 | 89.71 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 20 | NA |
| 668 | 89.71 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 676 | 89.72 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 20 | NA |
| 689 | 89.72 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 725 | 89.73 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 763 | 89.74 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 811 | 89.75 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 827 | 89.75 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 838 | 89.76 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 15 | 13 |
| 848 | 89.77 | wind | 7.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 860 | 89.77 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 877 | 89.78 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 898 | 89.78 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 900 | 89.78 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 980 | 89.80 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |