Os04g0626700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat 2 containing protein.
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Os04g0626700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.78 | 0.314 | 8.78 | -0.557 | 0.557 | 0.658 | -0.378 | -1.02 | -0.427 | 7.54 | 1005 | 162 | -- | -- |
| 46.33 | 0.317 | 8.79 | -0.59 | 0.562 | 0.701 | -0.454 | -- | -0.427 | 7.56 | 1006 | 164 | -- | -- |
| 45.14 | 0.313 | 8.78 | -0.564 | 0.559 | 0.671 | -- | -1.07 | -0.422 | 7.51 | 1006 | 161 | -- | -- |
| 46.9 | 0.319 | 8.79 | -0.598 | 0.562 | 0.7 | -- | -- | -0.421 | 7.56 | 1006 | 161 | -- | -- |
| 61.49 | 0.365 | 8.8 | -0.536 | -- | 0.796 | -- | -1.1 | -0.437 | -- | 1005 | 163 | -- | -- |
| 53.22 | 0.342 | 8.76 | -0.616 | 0.604 | -- | -0.5 | -- | -0.318 | 7.73 | -- | -- | -- | -- |
| 53.93 | 0.344 | 8.76 | -0.628 | 0.604 | -- | -- | -- | -0.317 | 7.7 | -- | -- | -- | -- |
| 63.39 | 0.371 | 8.81 | -0.588 | -- | 0.815 | -- | -- | -0.443 | -- | 1005 | 161 | -- | -- |
| 55.44 | 0.347 | 8.77 | -- | 0.626 | 0.801 | -- | -- | -0.363 | 7.38 | 1007 | 1001 | -- | -- |
| 73.6 | 0.401 | 8.78 | -0.621 | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
| 64.34 | 0.375 | 8.75 | -- | 0.599 | -- | -- | -- | -0.247 | 7.77 | -- | -- | -- | -- |
| 72.45 | 0.396 | 8.79 | -- | -- | 0.847 | -- | -- | -0.384 | -- | 1005 | 223 | -- | -- |
| 83.76 | 0.427 | 8.76 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 18 |
| 3 | 42.81 | temperature | 10 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 4 | 42.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 19 |
| 5 | 42.97 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 21 |
| 10 | 43.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 12 | 43.15 | temperature | 25 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 73 | 43.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 106 | 43.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 110 | 43.97 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 159 | 44.19 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 18 |
| 184 | 44.28 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 22 |
| 188 | 44.28 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 191 | 44.30 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 194 | 44.30 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 19 | 22 |
| 207 | 44.36 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 23 | 14 |
| 210 | 44.36 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 19 |
| 223 | 44.39 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 229 | 44.41 | atmosphere | 1005 | 720 | > th | dose dependent | sin | 12 | NA |
| 230 | 44.41 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 241 | 44.43 | atmosphere | 1005 | 270 | > th | dose dependent | sin | 8 | NA |
| 258 | 44.46 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 300 | 44.57 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 6 | NA |
| 316 | 44.61 | temperature | 25 | 90 | < th | dose dependent | sin | 19 | NA |
| 342 | 44.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 344 | 44.67 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 345 | 44.67 | temperature | 20 | 270 | < th | dose dependent | sin | 22 | NA |
| 403 | 44.77 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 21 |
| 417 | 44.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 17 |
| 424 | 44.80 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 426 | 44.81 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 19 | 17 |
| 452 | 44.85 | temperature | 25 | 10 | < th | dose dependent | sin | 18 | NA |
| 474 | 44.88 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 525 | 44.93 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 544 | 44.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 545 | 44.95 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 546 | 44.96 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 17 |
| 550 | 44.96 | wind | 9 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 577 | 44.99 | atmosphere | 1005 | 90 | > th | dose dependent | no | NA | NA |
| 647 | 45.06 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 662 | 45.07 | wind | 9 | 720 | > th | dose independent | rect. | 18 | 16 |
| 694 | 45.10 | atmosphere | 1005 | 10 | > th | dose dependent | no | NA | NA |
| 704 | 45.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 722 | 45.12 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 724 | 45.13 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 725 | 45.13 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 19 |
| 726 | 45.13 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 757 | 45.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 776 | 45.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 789 | 45.20 | wind | 9 | 720 | > th | dose independent | rect. | 21 | 13 |
| 807 | 45.21 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 838 | 45.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 842 | 45.24 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 10 |
| 870 | 45.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 969 | 45.35 | wind | 9 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 973 | 45.35 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 6 | 20 |