Os04g0626600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0626600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.11 | 0.29 | 8.46 | -0.29 | 0.188 | 3.12 | -0.229 | -1.12 | -0.166 | 8.7 | 10.8 | 694 | -- | -- |
| 38.72 | 0.29 | 8.43 | -0.0886 | 0.234 | 3.14 | -0.0378 | -- | -0.116 | 7.19 | 10.8 | 640 | -- | -- |
| 38.03 | 0.287 | 8.45 | -0.247 | 0.224 | 3.16 | -- | -0.906 | -0.159 | 7.35 | 14.14 | 645 | -- | -- |
| 38.73 | 0.29 | 8.43 | -0.0898 | 0.235 | 3.15 | -- | -- | -0.116 | 7.21 | 13.13 | 640 | -- | -- |
| 39.9 | 0.294 | 8.45 | -0.225 | -- | 2.96 | -- | -0.946 | -0.133 | -- | 13.46 | 685 | -- | -- |
| 158 | 0.589 | 8.35 | 0.688 | 0.558 | -- | 0.449 | -- | 0.362 | 20 | -- | -- | -- | -- |
| 158.59 | 0.59 | 8.35 | 0.675 | 0.557 | -- | -- | -- | 0.362 | 20.1 | -- | -- | -- | -- |
| 40.59 | 0.297 | 8.43 | -0.0585 | -- | 2.94 | -- | -- | -0.088 | -- | 13.14 | 693 | -- | -- |
| 38.9 | 0.29 | 8.43 | -- | 0.249 | 3.12 | -- | -- | -0.103 | 6.63 | 13.41 | 617 | -- | -- |
| 175.58 | 0.619 | 8.33 | 0.67 | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
| 170.61 | 0.611 | 8.36 | -- | 0.553 | -- | -- | -- | 0.287 | 20.2 | -- | -- | -- | -- |
| 40.67 | 0.297 | 8.43 | -- | -- | 2.92 | -- | -- | -0.0787 | -- | 13.39 | 688 | -- | -- |
| 187.43 | 0.639 | 8.35 | -- | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 3 | 36.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 25 | 38.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 30 | 38.38 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 58 | 39.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 73 | 40.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 132 | 41.66 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 146 | 41.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 463 | 45.27 | temperature | 10 | 1440 | > th | dose dependent | sin | 3 | NA |
| 628 | 45.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 636 | 46.01 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 945 | 47.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 9 |