Os04g0625600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os04g0625600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.13 | 0.221 | 10.2 | 0.332 | 0.117 | 0.373 | -0.648 | 0.841 | 0.386 | 11.4 | 61.9 | 572 | -- | -- |
| 22.84 | 0.223 | 10.2 | 0.391 | 0.1 | 0.459 | -0.596 | -- | 0.395 | 13.1 | 56.75 | 567 | -- | -- |
| 22.93 | 0.223 | 10.2 | 0.342 | 0.252 | 0.145 | -- | 1.04 | 0.353 | 9.57 | 65.8 | 220 | -- | -- |
| 24.18 | 0.229 | 10.2 | 0.359 | 0.12 | 0.407 | -- | -- | 0.39 | 10.7 | 56.86 | 559 | -- | -- |
| 24.45 | 0.23 | 10.2 | 0.334 | -- | 0.471 | -- | 0.387 | 0.388 | -- | 61.22 | 644 | -- | -- |
| 26.04 | 0.239 | 10.2 | 0.361 | 0.304 | -- | -0.168 | -- | 0.372 | 8.39 | -- | -- | -- | -- |
| 26.1 | 0.239 | 10.2 | 0.354 | 0.308 | -- | -- | -- | 0.371 | 8.1 | -- | -- | -- | -- |
| 24.65 | 0.231 | 10.2 | 0.368 | -- | 0.501 | -- | -- | 0.389 | -- | 57.99 | 654 | -- | -- |
| 27.63 | 0.245 | 10.2 | -- | 0.14 | 0.369 | -- | -- | 0.35 | 10.4 | 59.22 | 526 | -- | -- |
| 31.29 | 0.261 | 10.2 | 0.357 | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
| 29.41 | 0.254 | 10.2 | -- | 0.31 | -- | -- | -- | 0.332 | 8.02 | -- | -- | -- | -- |
| 28.17 | 0.247 | 10.2 | -- | -- | 0.482 | -- | -- | 0.357 | -- | 62.6 | 630 | -- | -- |
| 34.66 | 0.275 | 10.2 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.49 | humidity | 90 | 720 | < th | dose independent | rect. | 1 | 18 |
| 22 | 21.78 | humidity | 60 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 26 | 21.81 | humidity | 90 | 720 | < th | dose independent | sin | 0 | NA |
| 33 | 21.85 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 10 |
| 41 | 21.88 | humidity | 60 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 66 | 21.96 | humidity | 80 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 115 | 22.08 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 135 | 22.12 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 16 |
| 143 | 22.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 161 | 22.16 | radiation | 1 | 720 | < th | dose dependent | sin | 1 | NA |
| 189 | 22.18 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 6 |
| 191 | 22.18 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 19 |
| 250 | 22.24 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 17 |
| 272 | 22.26 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 5 |
| 351 | 22.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 364 | 22.32 | humidity | 90 | 720 | < th | dose dependent | rect. | 22 | 19 |
| 370 | 22.33 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 19 |
| 372 | 22.33 | humidity | 80 | 720 | > th | dose dependent | rect. | 24 | 5 |
| 390 | 22.34 | humidity | 80 | 270 | > th | dose independent | rect. | 16 | 19 |
| 392 | 22.34 | humidity | 70 | 720 | > th | dose dependent | sin | 9 | NA |
| 406 | 22.35 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 5 |
| 408 | 22.35 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 9 | 14 |
| 411 | 22.35 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 18 |
| 422 | 22.36 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 15 |
| 434 | 22.37 | humidity | 60 | 720 | > th | dose dependent | sin | 14 | NA |
| 520 | 22.42 | humidity | 60 | 720 | > th | dose dependent | no | NA | NA |
| 548 | 22.43 | humidity | 70 | 720 | > th | dose dependent | rect. | 24 | 8 |
| 561 | 22.44 | humidity | 90 | 720 | > th | dose independent | rect. | 8 | 20 |
| 601 | 22.46 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 623 | 22.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 660 | 22.49 | temperature | 20 | 90 | > th | dose independent | sin | 7 | NA |
| 661 | 22.49 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 9 | 7 |
| 681 | 22.50 | radiation | 40 | 720 | < th | dose independent | sin | 10 | NA |
| 719 | 22.52 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 720 | 22.52 | radiation | 1 | 720 | < th | dose independent | sin | 2 | NA |
| 737 | 22.53 | atmosphere | 1000 | 10 | > th | dose independent | sin | 19 | NA |
| 762 | 22.54 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 768 | 22.54 | humidity | 80 | 270 | < th | dose independent | rect. | 9 | 22 |
| 773 | 22.54 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 777 | 22.54 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 796 | 22.55 | humidity | 90 | 720 | > th | dose independent | rect. | 24 | 20 |
| 858 | 22.57 | radiation | 40 | 270 | < th | dose independent | sin | 7 | NA |
| 859 | 22.57 | humidity | 80 | 10 | > th | dose independent | rect. | 18 | 12 |
| 924 | 22.59 | radiation | 30 | 270 | < th | dose independent | rect. | 14 | 21 |
| 944 | 22.60 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 958 | 22.60 | radiation | 10 | 720 | < th | dose dependent | sin | 16 | NA |
| 975 | 22.61 | radiation | 10 | 720 | > th | dose independent | rect. | 12 | 6 |
| 976 | 22.61 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 7 |