Os04g0623700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Signal recognition particle 14 kDa protein (SRP14).
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Os04g0623700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Signal recognition particle 14 kDa protein (SRP14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.01 | 0.215 | 11.1 | -0.348 | 0.0455 | 0.491 | -0.854 | -0.928 | -0.0223 | 14.8 | 9.86 | 287 | -- | -- |
| 22.91 | 0.223 | 11.1 | -0.269 | 0.1 | 0.454 | 0.124 | -- | 0.0247 | 2.41 | 19.75 | 251 | -- | -- |
| 21.98 | 0.218 | 11.1 | -0.285 | 0.127 | 0.384 | -- | -0.369 | 0.00102 | 2.87 | 17.72 | 204 | -- | -- |
| 22.3 | 0.22 | 11.1 | -0.279 | 0.187 | 0.41 | -- | -- | 0.00582 | 0.572 | 19.75 | 257 | -- | -- |
| 22.35 | 0.22 | 11.1 | -0.262 | -- | 0.466 | -- | -0.321 | 0.00609 | -- | 13.8 | 202 | -- | -- |
| 25.21 | 0.235 | 11.1 | -0.324 | 0.443 | -- | -0.121 | -- | -0.0411 | 1.84 | -- | -- | -- | -- |
| 25.26 | 0.235 | 11.1 | -0.32 | 0.443 | -- | -- | -- | -0.0405 | 1.86 | -- | -- | -- | -- |
| 22.04 | 0.219 | 11.1 | -0.288 | -- | 0.457 | -- | -- | -0.0223 | -- | 9.992 | 215 | -- | -- |
| 24.66 | 0.231 | 11.1 | -- | 0.182 | 0.384 | -- | -- | 0.0217 | 0.415 | 17.57 | 250 | -- | -- |
| 37.15 | 0.285 | 11.1 | -0.302 | -- | -- | -- | -- | -0.0303 | -- | -- | -- | -- | -- |
| 27.97 | 0.247 | 11.1 | -- | 0.437 | -- | -- | -- | -0.00479 | 1.84 | -- | -- | -- | -- |
| 24.4 | 0.23 | 11.1 | -- | -- | 0.462 | -- | -- | 0.0317 | -- | 11.92 | 208 | -- | -- |
| 39.56 | 0.294 | 11.1 | -- | -- | -- | -- | -- | 0.00321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.15 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 2 | 19.70 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 3 | 19.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 5 | 20.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 7 | 20.13 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 10 | 20.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 11 | 20.30 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 12 | 20.33 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 17 | 20.36 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 25 | 20.37 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 34 | 20.39 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 35 | 20.39 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 58 | 20.41 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 88 | 20.43 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 115 | 20.43 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 22 | 13 |
| 119 | 20.43 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 22 | 13 |
| 144 | 20.44 | atmosphere | 1010.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 230 | 20.45 | atmosphere | 995.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 233 | 20.45 | atmosphere | 995.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 235 | 20.45 | atmosphere | 1015.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 239 | 20.45 | atmosphere | 1015.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 282 | 20.45 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 2 | 10 |
| 288 | 20.45 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 15 | 10 |
| 384 | 20.45 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 23 | 21 |
| 400 | 20.46 | atmosphere | 995.0 | 14400 | > th | dose dependent | sin | 2 | NA |
| 405 | 20.46 | atmosphere | 1010.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 410 | 20.46 | atmosphere | 1010.0 | 14400 | < th | dose dependent | no | NA | NA |
| 517 | 20.46 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 8 | 17 |
| 566 | 20.46 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 4 | 21 |
| 629 | 20.46 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 674 | 20.47 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 678 | 20.47 | atmosphere | 995.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 680 | 20.47 | atmosphere | 995.0 | 14400 | > th | dose dependent | no | NA | NA |
| 925 | 20.48 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 940 | 20.48 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |