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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0623200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.83 (0.0553) R2 : 0.648
β1 : -4.22 (0.206) R2dD : 0.353 R2D : 0.227
β2 : 2.22 (0.155) R2dC : 0.19 R2C : -0.0237
β3 : 5.6 (0.263) R2dE : 0.438 R2E : 0.116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0279 (0.121) R2dN8 : 9.32e-05 R2N8 : -0.00417
σ : 1.03
deviance : 487.63
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_____
C
peak time of C : 6.08
E
wheather : temperature
threshold : 4
memory length : 680
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21
open length of G : 19.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
482.85 1.03 5.86 -4.54 2.22 5.13 -1.3 -2.32 -0.135 7.2 10.48 678 21 19.2
486.33 1.03 5.83 -4.24 2.2 5.18 -1.2 -- -0.0555 7 9.225 674 21 19.3
486.13 1.03 5.88 -4.52 2.24 5.31 -- -1.98 -0.156 6.94 8.727 670 21 19.5
487.63 1.03 5.83 -4.22 2.22 5.6 -- -- -0.0279 6.08 4 680 21 19.4
553.91 1.1 5.92 -4.19 -- 4.97 -- -0.334 0.0498 -- -2.515 678 19.2 20.2
712.8 1.25 5.67 -3.18 2.23 -- -1.28 -- 0.643 10.3 -- -- -- --
719.3 1.26 5.67 -3.23 2.24 -- -- -- 0.641 10.4 -- -- -- --
545.22 1.09 5.9 -4.13 -- 5.13 -- -- -0.0479 -- -1.872 707 19.1 19.6
908.83 1.4 5.71 -- 1.57 3.31 -- -- 0.654 7.86 0.2267 610 20.9 19.8
1024.4 1.5 5.73 -3.27 -- -- -- -- 0.634 -- -- -- -- --
994.98 1.48 5.59 -- 2.25 -- -- -- 1 10.5 -- -- -- --
933.02 1.42 5.75 -- -- 3.61 -- -- 0.646 -- -5.857 649 20.2 18.2
1306.43 1.69 5.65 -- -- -- -- -- 0.997 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 486.83 temperature 10 720 > th dose dependent rect. 21 19
17 499.34 temperature 20 270 > th dose dependent rect. 3 14
18 499.49 temperature 25 720 < th dose dependent rect. 24 20
24 500.89 temperature 10 270 > th dose dependent rect. 1 23
33 501.95 temperature 15 270 > th dose dependent rect. 19 23
113 509.65 temperature 15 270 > th dose dependent rect. 10 23
151 513.15 temperature 20 10 > th dose dependent rect. 21 23
169 513.84 temperature 20 720 > th dose dependent sin 6 NA
171 513.87 temperature 25 720 < th dose dependent no NA NA
173 513.90 temperature 25 720 < th dose dependent rect. 15 23
174 513.93 temperature 25 720 < th dose dependent rect. 17 23
182 514.22 temperature 25 720 < th dose dependent rect. 13 23
207 515.32 temperature 25 720 < th dose dependent rect. 11 23
222 515.78 temperature 15 270 > th dose dependent no NA NA
255 516.69 temperature 25 720 < th dose dependent sin 2 NA
256 516.79 temperature 25 720 < th dose dependent rect. 6 23
259 516.90 temperature 25 720 < th dose dependent rect. 8 23
270 517.58 temperature 25 720 < th dose dependent rect. 4 23
273 517.68 temperature 30 720 < th dose dependent sin 6 NA
287 518.10 temperature 20 720 > th dose dependent rect. 4 4
316 519.20 temperature 10 720 > th dose dependent rect. 20 13
361 520.91 temperature 20 270 > th dose dependent sin 0 NA
396 521.94 temperature 10 720 > th dose dependent rect. 21 11
401 522.21 temperature 10 270 > th dose dependent sin 23 NA
437 523.28 temperature 20 10 > th dose dependent rect. 1 19
477 525.03 temperature 20 720 > th dose dependent rect. 1 8
495 525.61 temperature 25 90 > th dose independent rect. 3 15
506 526.32 temperature 25 1440 < th dose dependent rect. 21 1
540 527.33 temperature 10 720 > th dose dependent rect. 23 9
609 529.32 temperature 10 720 > th dose dependent rect. 12 21
649 530.35 temperature 20 10 > th dose dependent rect. 1 23
789 534.34 temperature 25 1440 < th dose dependent rect. 17 6
814 535.03 temperature 30 10 < th dose dependent rect. 7 23
815 535.04 temperature 25 1440 < th dose dependent rect. 17 8
879 536.50 temperature 25 1440 < th dose dependent rect. 10 17
881 536.52 temperature 25 1440 < th dose dependent sin 16 NA