Os04g0622600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to XA1.
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Os04g0622600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to XA1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.07 | 0.373 | 6.58 | 2.52 | 0.37 | -0.565 | -0.875 | 3.05 | 0.344 | 3.99 | 25.96 | 1440 | -- | -- |
| 64.38 | 0.374 | 6.66 | 1.91 | 0.379 | -0.429 | -1.04 | -- | 0.292 | 4.19 | 19.66 | 21463 | -- | -- |
| 65.15 | 0.376 | 6.59 | 2.48 | 0.344 | -0.596 | -- | 3.11 | 0.329 | 3.75 | 26.2 | 1529 | -- | -- |
| 65.65 | 0.377 | 6.63 | 2.12 | 0.377 | -0.617 | -- | -- | 0.372 | 3.9 | 11.47 | 22848 | -- | -- |
| 70.42 | 0.391 | 6.56 | 2.72 | -- | -0.794 | -- | 4.52 | 0.387 | -- | 26.2 | 1753 | -- | -- |
| 68.99 | 0.389 | 6.69 | 1.59 | 0.365 | -- | -0.894 | -- | 0.133 | 4.13 | -- | -- | -- | -- |
| 71.23 | 0.395 | 6.69 | 1.6 | 0.358 | -- | -- | -- | 0.138 | 3.93 | -- | -- | -- | -- |
| 72.99 | 0.398 | 6.64 | 2.11 | -- | -0.598 | -- | -- | 0.371 | -- | 7.18 | 22005 | -- | -- |
| 101.09 | 0.468 | 6.79 | -- | 0.349 | 0.973 | -- | -- | -0.338 | 4.19 | 12.79 | 47520 | -- | -- |
| 78.25 | 0.413 | 6.69 | 1.61 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 138.65 | 0.551 | 6.73 | -- | 0.389 | -- | -- | -- | -0.0398 | 3.88 | -- | -- | -- | -- |
| 107.8 | 0.484 | 6.8 | -- | -- | 0.987 | -- | -- | -0.337 | -- | 13.84 | 47520 | -- | -- |
| 146.97 | 0.566 | 6.73 | -- | -- | -- | -- | -- | -0.0312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 10 | 60.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 19 | 61.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 23 | 61.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 26 | 61.03 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 38 | 61.08 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 41 | 61.09 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 44 | 61.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 53 | 61.12 | radiation | 10.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 54 | 61.12 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 72 | 61.17 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 81 | 61.18 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 119 | 61.26 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 155 | 61.33 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 165 | 61.34 | humidity | 90.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 188 | 61.40 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 250 | 61.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 260 | 61.53 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 337 | 61.65 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 355 | 61.68 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 383 | 61.71 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 385 | 61.71 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 398 | 61.72 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 440 | 61.77 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 467 | 61.79 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 493 | 61.81 | humidity | 90.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 509 | 61.82 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 517 | 61.82 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 518 | 61.82 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 529 | 61.82 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 552 | 61.83 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 584 | 61.85 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 587 | 61.86 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 619 | 61.87 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 629 | 61.88 | humidity | 90.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 630 | 61.88 | humidity | 90.0 | 43200 | < th | dose independent | no | NA | NA |
| 655 | 61.88 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 661 | 61.89 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 669 | 61.89 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 681 | 61.89 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 712 | 61.91 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 720 | 61.91 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 748 | 61.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 771 | 61.92 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 777 | 61.93 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 800 | 61.93 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 819 | 61.94 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 825 | 61.94 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 830 | 61.94 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 837 | 61.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 863 | 61.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 869 | 61.96 | humidity | 90.0 | 43200 | > th | dose independent | no | NA | NA |
| 891 | 61.96 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 20 |
| 895 | 61.97 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 896 | 61.97 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 917 | 61.97 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 942 | 61.99 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 970 | 62.01 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 1000 | 62.03 | humidity | 90.0 | 43200 | < th | dose independent | sin | 15 | NA |