Os04g0621700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0621700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.33 | 0.295 | 3.19 | 0.126 | 0.133 | 0.269 | 0.0505 | 0.805 | 0.000989 | 8.7 | 89 | 4550 | -- | -- |
| 40.01 | 0.295 | 3.19 | 0.072 | 0.129 | 0.297 | 0.0643 | -- | -0.0134 | 9.1 | 89 | 4302 | -- | -- |
| 39.23 | 0.292 | 3.19 | 0.14 | 0.134 | 0.23 | -- | 0.863 | 0.00536 | 8.77 | 89 | 5900 | -- | -- |
| 40.03 | 0.295 | 3.19 | 0.0752 | 0.128 | 0.294 | -- | -- | -0.0136 | 8.87 | 89 | 4317 | -- | -- |
| 40.18 | 0.295 | 3.2 | 0.135 | -- | 0.246 | -- | 0.812 | 0.00175 | -- | 89 | 5867 | -- | -- |
| 41.17 | 0.301 | 3.18 | 0.0687 | 0.127 | -- | 0.0648 | -- | 0.0375 | 9.15 | -- | -- | -- | -- |
| 41.18 | 0.301 | 3.18 | 0.0707 | 0.128 | -- | -- | -- | 0.0374 | 8.95 | -- | -- | -- | -- |
| 40.93 | 0.298 | 3.2 | 0.0786 | -- | 0.305 | -- | -- | -0.0137 | -- | 88.98 | 4345 | -- | -- |
| 40.19 | 0.295 | 3.19 | -- | 0.127 | 0.298 | -- | -- | -0.021 | 8.88 | 88.05 | 4303 | -- | -- |
| 42.12 | 0.303 | 3.19 | 0.0707 | -- | -- | -- | -- | 0.0382 | -- | -- | -- | -- | -- |
| 41.31 | 0.301 | 3.18 | -- | 0.128 | -- | -- | -- | 0.0295 | 8.91 | -- | -- | -- | -- |
| 41.09 | 0.299 | 3.2 | -- | -- | 0.303 | -- | -- | -0.0212 | -- | 88 | 4340 | -- | -- |
| 42.25 | 0.303 | 3.19 | -- | -- | -- | -- | -- | 0.0304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.34 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 8 | 38.57 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 9 | 38.59 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 11 | 38.68 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 12 | 38.69 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 13 | 38.69 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 14 | 38.69 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 16 | 38.70 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 17 | 38.70 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 24 | 38.74 | wind | 7.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 28 | 38.75 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 3 | 6 |
| 30 | 38.76 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 32 | 38.77 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 33 | 38.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 36 | 38.78 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 2 | 8 |
| 37 | 38.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 40 | 38.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 42 | 38.80 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 49 | 38.82 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 50 | 38.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 55 | 38.83 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 82 | 38.84 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 13 |
| 118 | 38.89 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 3 | 10 |
| 119 | 38.89 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 3 | 10 |
| 121 | 38.89 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 6 | NA |
| 122 | 38.89 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 137 | 38.90 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 177 | 38.93 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 14 |
| 179 | 38.93 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 215 | 38.96 | wind | 7.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 243 | 38.98 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 23 | 14 |
| 251 | 38.99 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 262 | 38.99 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 16 |
| 338 | 39.04 | humidity | 80.0 | 4320 | > th | dose independent | sin | 6 | NA |
| 348 | 39.05 | humidity | 80.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 349 | 39.05 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 455 | 39.10 | wind | 1.0 | 30 | < th | dose dependent | rect. | 1 | 2 |
| 480 | 39.11 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 518 | 39.13 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 537 | 39.13 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 553 | 39.14 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 554 | 39.14 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 564 | 39.15 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 565 | 39.15 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 575 | 39.15 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 625 | 39.18 | wind | 5.0 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 632 | 39.18 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 647 | 39.19 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 5 | NA |
| 648 | 39.19 | wind | 1.0 | 10 | < th | dose independent | rect. | 1 | 2 |
| 652 | 39.19 | wind | 5.0 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 661 | 39.19 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 675 | 39.20 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 5 | NA |
| 684 | 39.20 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 696 | 39.20 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 5 | NA |
| 699 | 39.20 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 8 |
| 720 | 39.21 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 732 | 39.21 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 758 | 39.22 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 800 | 39.23 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 804 | 39.23 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 871 | 39.24 | radiation | 20.0 | 10 | < th | dose independent | rect. | 15 | 12 |
| 896 | 39.25 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 938 | 39.26 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 997 | 39.28 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 4 |