Os04g0621600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os04g0621600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.17 | 0.428 | 2.92 | 0.0933 | 0.0938 | 0.198 | -0.352 | -0.414 | 0.118 | 11.5 | 23.5 | 29 | -- | -- |
| 83.99 | 0.43 | 2.94 | -0.0527 | 0.101 | 0.188 | -0.147 | -- | 0.0742 | 10.6 | 23.4 | 30 | -- | -- |
| 83.58 | 0.426 | 2.93 | 0.035 | 0.0986 | 0.198 | -- | -0.278 | 0.104 | 10.9 | 23.4 | 28 | -- | -- |
| 83.96 | 0.427 | 2.94 | -0.053 | 0.103 | 0.196 | -- | -- | 0.0783 | 10.9 | 23.38 | 21 | -- | -- |
| 84.14 | 0.427 | 2.93 | 0.0255 | -- | 0.176 | -- | -0.283 | 0.0952 | -- | 23.46 | 28 | -- | -- |
| 86.49 | 0.436 | 2.95 | -0.131 | 0.0593 | -- | -0.18 | -- | -0.00155 | 9.05 | -- | -- | -- | -- |
| 86.59 | 0.436 | 2.95 | -0.137 | 0.0621 | -- | -- | -- | -0.00199 | 8.32 | -- | -- | -- | -- |
| 84.57 | 0.428 | 2.94 | -0.0654 | -- | 0.172 | -- | -- | 0.0686 | -- | 23.37 | 21 | -- | -- |
| 84.02 | 0.427 | 2.93 | -- | 0.105 | 0.204 | -- | -- | 0.0869 | 10.9 | 23.4 | 21 | -- | -- |
| 86.81 | 0.435 | 2.96 | -0.137 | -- | -- | -- | -- | -0.00132 | -- | -- | -- | -- | -- |
| 87.09 | 0.437 | 2.95 | -- | 0.0615 | -- | -- | -- | 0.0133 | 8.48 | -- | -- | -- | -- |
| 84.67 | 0.429 | 2.94 | -- | -- | 0.181 | -- | -- | 0.0781 | -- | 23.37 | 21 | -- | -- |
| 87.3 | 0.436 | 2.95 | -- | -- | -- | -- | -- | 0.0139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.54 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 1 |
| 2 | 69.54 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 3 | 69.76 | temperature | 20 | 30 | < th | dose dependent | rect. | 14 | 3 |
| 4 | 69.77 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 1 |
| 12 | 69.77 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 26 | 69.79 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 27 | 69.79 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 57 | 71.57 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 4 |
| 59 | 72.33 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 73 | 72.33 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 130 | 75.12 | humidity | 90 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 136 | 75.36 | radiation | 1 | 90 | < th | dose dependent | rect. | 11 | 5 |
| 155 | 76.21 | wind | 5 | 90 | > th | dose independent | rect. | 5 | 2 |
| 157 | 76.21 | wind | 5 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 189 | 76.97 | humidity | 80 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 224 | 77.63 | humidity | 80 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 226 | 77.68 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 229 | 77.71 | humidity | 80 | 10 | > th | dose dependent | rect. | 14 | 3 |
| 234 | 77.75 | humidity | 80 | 90 | > th | dose independent | rect. | 14 | 1 |
| 305 | 78.30 | wind | 5 | 10 | > th | dose independent | rect. | 3 | 5 |
| 323 | 78.36 | wind | 5 | 10 | > th | dose independent | rect. | 7 | 1 |
| 348 | 78.52 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 1 |
| 350 | 78.54 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 5 |
| 361 | 78.67 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 8 |
| 388 | 78.96 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 1 |
| 411 | 79.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 424 | 79.25 | humidity | 60 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 427 | 79.28 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 1 |
| 441 | 79.36 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 445 | 79.37 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 7 |
| 471 | 79.40 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 495 | 79.41 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 542 | 79.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 718 | 79.71 | radiation | 1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 804 | 80.00 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 4 |
| 822 | 80.01 | humidity | 70 | 10 | < th | dose dependent | rect. | 17 | 18 |
| 942 | 80.32 | wind | 5 | 10 | < th | dose independent | rect. | 16 | 1 |