Os04g0620500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0620500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.95 | 0.253 | 10.4 | 0.416 | 0.0883 | -0.779 | -0.152 | -0.513 | 0.48 | 4.81 | 3.31 | 125 | -- | -- |
| 29.27 | 0.252 | 10.5 | 0.405 | 0.0711 | -0.748 | 0.0804 | -- | 0.479 | 3.97 | 2.331 | 141 | -- | -- |
| 28.89 | 0.25 | 10.4 | 0.418 | 0.0586 | -0.797 | -- | -0.432 | 0.482 | 5.83 | 1.808 | 140 | -- | -- |
| 29.25 | 0.252 | 10.5 | 0.411 | 0.0448 | -0.763 | -- | -- | 0.482 | 5.09 | 1.599 | 158 | -- | -- |
| 28.95 | 0.251 | 10.5 | 0.419 | -- | -0.79 | -- | -0.408 | 0.483 | -- | 1.552 | 163 | -- | -- |
| 36.75 | 0.284 | 10.5 | 0.405 | 0.478 | -- | 0.159 | -- | 0.443 | 1.66 | -- | -- | -- | -- |
| 36.85 | 0.284 | 10.5 | 0.4 | 0.478 | -- | -- | -- | 0.442 | 1.69 | -- | -- | -- | -- |
| 29.31 | 0.252 | 10.5 | 0.42 | -- | -0.773 | -- | -- | 0.48 | -- | 1.25 | 168 | -- | -- |
| 33.7 | 0.27 | 10.5 | -- | 0.0671 | -0.753 | -- | -- | 0.437 | 4.28 | 2.117 | 152 | -- | -- |
| 50.77 | 0.333 | 10.5 | 0.42 | -- | -- | -- | -- | 0.453 | -- | -- | -- | -- | -- |
| 41.07 | 0.3 | 10.5 | -- | 0.485 | -- | -- | -- | 0.398 | 1.71 | -- | -- | -- | -- |
| 33.83 | 0.271 | 10.5 | -- | -- | -0.79 | -- | -- | 0.438 | -- | 1.411 | 158 | -- | -- |
| 55.41 | 0.347 | 10.5 | -- | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.32 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 2 | 28.35 | humidity | 50 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 4 | 28.38 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 5 | 28.41 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 17 |
| 9 | 28.47 | humidity | 60 | 30 | > th | dose independent | rect. | 5 | 17 |
| 20 | 28.63 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 22 | 28.65 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 23 | 28.68 | radiation | 1 | 270 | > th | dose dependent | sin | 4 | NA |
| 35 | 28.76 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 45 | 28.82 | radiation | 40 | 30 | < th | dose dependent | rect. | 5 | 17 |
| 48 | 28.85 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 77 | 28.94 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 90 | 29.03 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 92 | 29.03 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 110 | 29.08 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 138 | 29.18 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 21 |
| 177 | 29.24 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 12 |
| 208 | 29.27 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 217 | 29.32 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 9 |
| 243 | 29.37 | humidity | 60 | 90 | > th | dose dependent | sin | 0 | NA |
| 249 | 29.38 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 328 | 29.51 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 387 | 29.52 | humidity | 70 | 270 | > th | dose independent | rect. | 2 | 16 |
| 436 | 29.60 | radiation | 40 | 90 | < th | dose dependent | sin | 23 | NA |
| 461 | 29.66 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 17 |
| 489 | 29.66 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 653 | 29.75 | radiation | 40 | 30 | < th | dose dependent | rect. | 5 | 10 |
| 754 | 29.85 | radiation | 10 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 772 | 29.88 | humidity | 90 | 90 | < th | dose dependent | sin | 0 | NA |
| 787 | 29.91 | humidity | 70 | 90 | < th | dose independent | rect. | 9 | 8 |
| 799 | 29.92 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 815 | 29.94 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 816 | 29.94 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 846 | 29.97 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 8 |
| 859 | 29.99 | humidity | 80 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 873 | 30.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 878 | 30.02 | radiation | 20 | 270 | < th | dose independent | sin | 4 | NA |
| 886 | 30.02 | radiation | 40 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 951 | 30.07 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 22 |