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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0619800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.06 (0.0851) R2 : 0.427
β1 : -5.27 (0.31) R2dD : 0.374 R2D : 0.309
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.08 (0.251) R2dE : 0.0922 R2E : 0.0638
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.477 (0.186) R2dN8 : 0.0116 R2N8 : -0.000873
σ : 1.58
deviance : 1154.59
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 72
memory length : 709
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.7
open length of G : 2.52

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1118.88 1.57 5 -4.88 0.612 1.44 -2.15 6.12 -0.541 22.3 71 701 17.9 2.17
1135.45 1.57 5.04 -5.1 0.48 1.88 -1.96 -- -0.518 21.9 72.02 710 17.7 2.48
1135.86 1.57 5 -4.89 0.57 1.44 -- 5.08 -0.572 23 70.95 696 17.9 3.85
1141.02 1.57 5.06 -5.2 0.469 1.94 -- -- -0.476 22.5 72 706 17.8 2.43
1151.11 1.58 5 -5.11 -- 2 -- 1.94 -0.442 -- 72.28 711 17.6 6.03
1263.13 1.67 5.12 -5.14 1.02 -- -0.618 -- -0.806 0.597 -- -- -- --
1264.51 1.67 5.11 -5.12 1.03 -- -- -- -0.804 0.853 -- -- -- --
1154.59 1.58 5.06 -5.27 -- 2.08 -- -- -0.477 -- 72 709 17.7 2.52
1452.7 1.78 5.01 -- 0.432 3.4 -- -- -0.729 22.4 66.02 35440 17.2 1.93
1330.37 1.7 5.1 -5.08 -- -- -- -- -0.785 -- -- -- -- --
1954.57 2.07 4.99 -- 0.947 -- -- -- -0.234 0.613 -- -- -- --
1368.44 1.72 5.06 -- -- 4.73 -- -- -0.424 -- 65.36 30916 17 2.07
2010.85 2.09 4.97 -- -- -- -- -- -0.221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1121.75 temperature 30 720 > th dose dependent rect. 18 1
15 1125.38 humidity 70 720 < th dose independent rect. 18 2
29 1130.25 wind 1 14400 < th dose independent rect. 1 2
58 1136.30 wind 1 14400 > th dose independent rect. 1 2
59 1136.87 humidity 80 720 < th dose dependent rect. 18 1
60 1137.29 wind 1 90 < th dose independent rect. 4 1
62 1140.42 wind 1 90 < th dose dependent rect. 4 1
79 1141.21 humidity 70 720 < th dose dependent rect. 18 14
94 1143.86 humidity 50 1440 < th dose independent rect. 16 1
95 1144.82 humidity 50 1440 < th dose dependent rect. 16 1
99 1145.91 humidity 50 1440 > th dose independent rect. 16 1
100 1146.67 temperature 30 720 > th dose independent rect. 18 1
116 1147.93 humidity 90 4320 > th dose dependent rect. 3 1
118 1149.20 humidity 70 720 > th dose independent rect. 18 8
123 1150.00 humidity 90 4320 > th dose dependent rect. 2 3
131 1154.05 humidity 70 720 > th dose independent rect. 18 14
196 1159.61 temperature 25 720 > th dose dependent rect. 21 1
214 1160.51 humidity 90 14400 < th dose independent rect. 2 4
228 1162.19 humidity 70 720 > th dose independent rect. 17 3
278 1163.79 humidity 70 720 > th dose independent sin 12 NA
301 1164.78 temperature 30 720 < th dose independent rect. 18 8
302 1164.82 temperature 20 90 > th dose dependent rect. 3 2
308 1165.25 radiation 1 720 < th dose dependent rect. 1 15
313 1165.72 atmosphere 995 43200 < th dose dependent rect. 17 7
330 1166.11 temperature 15 1440 > th dose independent rect. 6 12
340 1166.82 radiation 1 720 > th dose independent rect. 7 8
341 1166.86 atmosphere 995 43200 < th dose independent rect. 18 6
342 1166.87 radiation 1 720 < th dose dependent rect. 3 13
344 1166.93 humidity 90 90 > th dose dependent rect. 4 1
368 1167.56 temperature 20 90 > th dose independent rect. 4 1
373 1167.87 wind 3 4320 > th dose independent rect. 5 4
381 1168.06 humidity 70 1440 < th dose independent sin 13 NA
382 1168.07 radiation 1 270 < th dose dependent rect. 5 23
391 1168.32 humidity 70 1440 > th dose independent rect. 15 12
393 1168.36 humidity 70 1440 > th dose independent rect. 15 10
401 1168.48 humidity 70 1440 > th dose independent rect. 15 5
402 1168.52 radiation 10 1440 > th dose independent rect. 15 15
407 1168.56 atmosphere 995 43200 < th dose dependent rect. 16 9
414 1168.74 temperature 15 90 > th dose independent rect. 5 23
416 1168.81 radiation 10 1440 > th dose independent rect. 15 3
428 1168.86 atmosphere 995 43200 < th dose independent sin 12 NA
444 1168.97 atmosphere 995 43200 < th dose dependent rect. 15 12
456 1169.27 atmosphere 995 43200 > th dose independent rect. 18 7
472 1169.53 atmosphere 995 43200 > th dose independent sin 12 NA
496 1169.78 atmosphere 995 43200 < th dose independent rect. 17 15
500 1169.90 atmosphere 995 43200 > th dose independent rect. 17 15
506 1170.14 wind 3 4320 < th dose independent rect. 5 2
508 1170.14 radiation 1 720 > th dose independent rect. 18 11
511 1170.21 radiation 1 720 > th dose independent rect. 18 1
553 1170.70 humidity 80 720 > th dose dependent rect. 2 14
555 1170.75 wind 3 4320 < th dose independent rect. 5 4
557 1170.80 humidity 90 720 > th dose dependent rect. 2 3
575 1170.95 humidity 90 90 > th dose independent rect. 4 1
594 1171.20 wind 1 14400 < th dose dependent rect. 1 3
604 1171.43 wind 3 4320 > th dose independent rect. 5 2
608 1171.50 radiation 10 1440 > th dose independent sin 15 NA
614 1171.57 temperature 30 1440 < th dose independent rect. 18 3
642 1171.90 temperature 30 1440 < th dose independent rect. 18 5
650 1172.07 atmosphere 995 43200 < th dose independent rect. 17 13
666 1172.11 humidity 70 1440 < th dose dependent sin 12 NA
710 1172.71 wind 3 4320 > th dose independent rect. 23 11
719 1172.77 radiation 1 270 < th dose dependent rect. 18 23
733 1172.82 radiation 1 720 > th dose independent rect. 7 12
745 1172.89 wind 3 10 < th dose dependent rect. 4 2
765 1173.03 wind 3 4320 > th dose independent rect. 1 9
876 1174.17 humidity 80 1440 < th dose dependent sin 15 NA
884 1174.27 wind 3 4320 < th dose independent rect. 1 8
904 1174.60 wind 3 4320 < th dose independent rect. 23 11
905 1174.62 radiation 10 1440 < th dose independent rect. 15 1
957 1174.96 radiation 10 1440 > th dose independent rect. 11 19
976 1175.09 radiation 10 1440 > th dose independent rect. 11 7
990 1175.10 wind 7 90 < th dose independent rect. 5 23
1000 1175.30 radiation 10 1440 < th dose dependent rect. 15 3