Os04g0619400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0619400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.04 | 0.438 | 10 | -0.344 | 0.698 | 0.678 | 0.701 | -1.9 | 0.185 | 22.7 | 20.67 | 2610 | -- | -- |
| 91.38 | 0.445 | 9.97 | 0.0291 | 0.672 | 1.12 | 0.558 | -- | 0.301 | 22.8 | 19.4 | 2163 | -- | -- |
| 88.91 | 0.439 | 10 | -0.385 | 0.702 | 0.675 | -- | -1.91 | 0.183 | 22.8 | 20.8 | 2704 | -- | -- |
| 92.53 | 0.448 | 9.97 | 0.00614 | 0.675 | 1.12 | -- | -- | 0.302 | 23 | 19.34 | 2116 | -- | -- |
| 118.02 | 0.506 | 10 | -0.364 | -- | 0.866 | -- | -1.71 | 0.183 | -- | 20.6 | 2344 | -- | -- |
| 113.87 | 0.5 | 9.92 | 0.537 | 0.74 | -- | 0.537 | -- | 0.531 | 22.9 | -- | -- | -- | -- |
| 115.04 | 0.502 | 9.92 | 0.515 | 0.736 | -- | -- | -- | 0.528 | 23 | -- | -- | -- | -- |
| 120.08 | 0.51 | 9.96 | -0.03 | -- | 1.21 | -- | -- | 0.277 | -- | 19.6 | 2276 | -- | -- |
| 92.53 | 0.448 | 9.97 | -- | 0.675 | 1.12 | -- | -- | 0.301 | 23 | 19.33 | 2116 | -- | -- |
| 148.78 | 0.57 | 9.9 | 0.531 | -- | -- | -- | -- | 0.534 | -- | -- | -- | -- | -- |
| 122.02 | 0.517 | 9.93 | -- | 0.741 | -- | -- | -- | 0.471 | 23.1 | -- | -- | -- | -- |
| 120.12 | 0.51 | 9.96 | -- | -- | 1.21 | -- | -- | 0.274 | -- | 19.6 | 2276 | -- | -- |
| 156.23 | 0.583 | 9.91 | -- | -- | -- | -- | -- | 0.475 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.19 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 2 | 85.36 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 3 | 85.63 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 5 | 85.68 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 11 | 86.15 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 19 | 86.54 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 23 | 86.69 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 29 | 86.76 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 50 | 87.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 51 | 87.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 76 | 87.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 94 | 87.67 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 106 | 87.81 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 111 | 87.88 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 121 | 87.92 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 208 | 88.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 243 | 88.84 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 265 | 88.95 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 331 | 89.34 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 376 | 89.58 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 403 | 89.75 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 421 | 89.75 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 473 | 89.87 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 486 | 89.93 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 494 | 89.97 | wind | 3.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 512 | 90.09 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 525 | 90.13 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 528 | 90.14 | wind | 3.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 534 | 90.17 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 535 | 90.18 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 543 | 90.20 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 544 | 90.20 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 546 | 90.21 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 553 | 90.23 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 582 | 90.35 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 598 | 90.38 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 601 | 90.39 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 603 | 90.39 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 611 | 90.41 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 618 | 90.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 628 | 90.47 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 635 | 90.49 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 636 | 90.49 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 637 | 90.49 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 644 | 90.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 684 | 90.60 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 10 | 4 |
| 693 | 90.62 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 718 | 90.68 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 768 | 90.80 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 831 | 90.96 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 848 | 91.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 855 | 91.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 908 | 91.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 960 | 91.14 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 985 | 91.18 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 998 | 91.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 999 | 91.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |