Os04g0619200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os04g0619200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.27 | 0.431 | 3.97 | 0.171 | 0.151 | 0.605 | 0.624 | -0.617 | 0.637 | 1.49 | 0.3399 | 40 | -- | -- |
| 84.83 | 0.429 | 3.97 | 0.142 | 0.136 | 0.607 | -0.091 | -- | 0.644 | 1.16 | 0.3399 | 41 | -- | -- |
| 84.64 | 0.428 | 3.97 | 0.149 | 0.142 | 0.613 | -- | -0.178 | 0.631 | 1.45 | 0.3 | 41 | -- | -- |
| 84.75 | 0.429 | 3.97 | 0.136 | 0.167 | 0.588 | -- | -- | 0.632 | 0.573 | 0.39 | 44 | -- | -- |
| 85.07 | 0.43 | 3.97 | 0.147 | -- | 0.706 | -- | -0.184 | 0.636 | -- | 0.42 | 48 | -- | -- |
| 91.91 | 0.449 | 3.99 | 0.0927 | 0.857 | -- | -0.108 | -- | 0.62 | 0.0747 | -- | -- | -- | -- |
| 91.96 | 0.449 | 3.99 | 0.0969 | 0.857 | -- | -- | -- | 0.621 | 0.086 | -- | -- | -- | -- |
| 85.13 | 0.43 | 3.97 | 0.148 | -- | 0.702 | -- | -- | 0.636 | -- | 0.38 | 45 | -- | -- |
| 85.24 | 0.43 | 3.98 | -- | 0.186 | 0.573 | -- | -- | 0.618 | 0.541 | 0.38 | 44 | -- | -- |
| 138.24 | 0.549 | 3.97 | 0.124 | -- | -- | -- | -- | 0.633 | -- | -- | -- | -- | -- |
| 92.2 | 0.449 | 3.99 | -- | 0.859 | -- | -- | -- | 0.61 | 0.0923 | -- | -- | -- | -- |
| 85.7 | 0.431 | 3.97 | -- | -- | 0.704 | -- | -- | 0.628 | -- | 0.39 | 50 | -- | -- |
| 138.64 | 0.55 | 3.97 | -- | -- | -- | -- | -- | 0.619 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 16 | 75.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 27 | 76.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 28 | 76.81 | temperature | 10 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 37 | 77.12 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 13 |
| 39 | 77.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 46 | 77.32 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 10 |
| 82 | 77.96 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 86 | 78.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 89 | 78.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 138 | 78.66 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 144 | 78.70 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 242 | 79.60 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 245 | 79.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 254 | 79.71 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 255 | 79.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 269 | 79.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 10 |
| 272 | 79.83 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 11 |
| 309 | 79.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 349 | 80.18 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 356 | 80.23 | radiation | 1 | 30 | > th | dose independent | rect. | 12 | 23 |
| 402 | 80.42 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 4 |
| 435 | 80.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 439 | 80.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 444 | 80.58 | temperature | 25 | 270 | < th | dose independent | sin | 13 | NA |
| 457 | 80.62 | temperature | 25 | 270 | > th | dose independent | sin | 13 | NA |
| 515 | 80.80 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 558 | 81.02 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 18 |
| 569 | 81.05 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 616 | 81.21 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 638 | 81.28 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 13 |
| 660 | 81.38 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 5 | 1 |
| 669 | 81.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 700 | 81.49 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 757 | 81.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 769 | 81.69 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 20 |
| 816 | 81.82 | temperature | 10 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 826 | 81.86 | wind | 9 | 720 | < th | dose independent | rect. | 24 | 19 |
| 852 | 81.90 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 876 | 81.97 | radiation | 40 | 720 | < th | dose independent | rect. | 19 | 14 |
| 909 | 82.06 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 910 | 82.07 | radiation | 1 | 30 | > th | dose independent | rect. | 12 | 21 |
| 912 | 82.07 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 916 | 82.09 | wind | 5 | 90 | < th | dose independent | rect. | 17 | 12 |
| 925 | 82.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |