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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0619000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAM (No apical meristem) protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.056) R2 : 0.708
β1 : -4.72 (0.257) R2dD : 0.497 R2D : 0.181
β2 : 1.19 (0.117) R2dC : 0.0668 R2C : -0.0319
β3 : 5.32 (0.339) R2dE : 0.583 R2E : 0.228
β4 : -3.73 (0.476) R2dD*C : 0.0398 R2D*C : -0.0283
β5 : 11.7 (1.18) R2dD*E : 0.382 R2D*E : -1.04
γ1 : -1.28 (0.109) R2dN8 : 0.14 R2N8 : 0.0461
σ : 0.889
deviance : 358.05
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_____
C
peak time of C : 9.05
E
wheather : radiation
threshold : 0.1775
memory length : 4324
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
358.05 0.889 4.43 -4.72 1.19 5.32 -3.73 11.7 -1.28 9.05 0.1775 4324 -- --
463.8 1 4.1 -2.73 1.25 3.99 -1.81 -- -0.78 10.5 0.5936 7459 -- --
392.03 0.922 4.44 -4.84 1.54 5.5 -- 12.5 -1.29 10.2 0.1616 4396 -- --
433.5 0.97 4.11 -2.31 1.42 3.36 -- -- -0.707 9.24 0.09341 17407 -- --
462.9 1 4.59 -4.83 -- 5.55 -- 12.2 -1.38 -- 0.0822 14162 -- --
569.59 1.12 4.24 -3.98 1.2 -- -3.59 -- -1.46 9.15 -- -- -- --
613.97 1.16 4.24 -4.11 1.21 -- -- -- -1.46 9.55 -- -- -- --
427.32 0.963 4.06 -1.98 -- 3.39 -- -- -0.372 -- 1.499 28391 -- --
386.48 0.916 3.89 -- 1.15 4.1 -- -- 0.143 9.52 0.05978 47520 -- --
700.22 1.24 4.28 -4.11 -- -- -- -- -1.46 -- -- -- -- --
1058.21 1.52 4.14 -- 1.22 -- -- -- -1 9.8 -- -- -- --
439.27 0.976 3.92 -- -- 4.46 -- -- 0.111 -- 1.229 34121 -- --
1146.77 1.58 4.17 -- -- -- -- -- -0.999 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 324.39 radiation 10 43200 < th dose dependent rect. 2 4
3 324.40 radiation 10 43200 < th dose dependent rect. 4 2
6 324.50 radiation 10 43200 < th dose dependent rect. 22 8
8 324.52 radiation 10 43200 < th dose dependent rect. 20 10
11 324.56 radiation 40 43200 < th dose dependent rect. 2 4
13 324.60 radiation 40 43200 < th dose dependent rect. 4 2
45 326.32 radiation 30 43200 < th dose independent rect. 15 16
46 326.52 atmosphere 1010 43200 > th dose independent rect. 19 1
48 326.54 atmosphere 1010 43200 < th dose independent rect. 18 2
51 327.22 radiation 30 43200 < th dose independent rect. 15 4
52 327.22 radiation 30 43200 < th dose independent rect. 15 6
53 327.23 radiation 30 43200 < th dose independent rect. 15 2
55 327.23 radiation 30 43200 < th dose independent rect. 15 8
60 327.29 radiation 30 43200 < th dose independent rect. 15 12
62 327.29 radiation 1 43200 > th dose dependent rect. 18 12
67 327.48 atmosphere 1010 43200 > th dose independent rect. 1 1
78 328.37 radiation 10 43200 < th dose independent rect. 16 13
80 328.47 atmosphere 1010 43200 < th dose independent rect. 1 1
86 328.54 atmosphere 1010 43200 > th dose independent rect. 18 8
91 328.57 radiation 10 43200 < th dose independent rect. 16 3
105 328.60 radiation 10 43200 < th dose independent rect. 16 11
150 329.33 atmosphere 1010 43200 < th dose independent rect. 17 9
199 329.94 radiation 1 43200 > th dose dependent rect. 4 2
280 330.90 atmosphere 1010 43200 > th dose independent sin 15 NA
303 331.23 atmosphere 1010 43200 < th dose independent sin 15 NA
406 332.31 radiation 10 43200 < th dose independent sin 14 NA
413 332.36 radiation 1 43200 < th dose dependent rect. 19 16
416 332.38 radiation 1 43200 < th dose dependent rect. 23 12
417 332.38 radiation 1 43200 < th dose dependent rect. 21 14
453 332.64 radiation 1 43200 < th dose dependent rect. 3 8
455 332.67 atmosphere 1005 43200 > th dose independent rect. 12 3
470 332.78 radiation 40 43200 < th dose independent sin 13 NA
605 333.71 atmosphere 1000 43200 > th dose dependent rect. 17 1
620 333.77 radiation 20 43200 > th dose dependent rect. 16 16
737 334.25 atmosphere 1010 43200 > th dose independent no NA NA
750 334.29 atmosphere 1000 43200 > th dose dependent rect. 13 6
754 334.30 atmosphere 1010 43200 > th dose independent rect. 22 23
786 334.44 radiation 1 43200 > th dose independent rect. 7 2
812 334.54 atmosphere 1010 43200 < th dose independent no NA NA
816 334.55 atmosphere 1010 43200 < th dose independent rect. 22 23
817 334.56 radiation 1 43200 < th dose independent rect. 7 2
819 334.56 atmosphere 1000 43200 > th dose dependent rect. 1 1
821 334.56 radiation 30 43200 > th dose dependent rect. 15 18
878 334.87 atmosphere 1000 43200 > th dose dependent rect. 13 1
932 335.07 radiation 1 43200 < th dose dependent sin 8 NA
943 335.13 radiation 40 43200 > th dose dependent sin 13 NA
991 335.28 radiation 40 43200 > th dose dependent rect. 13 20