Os04g0618400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0618400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 520.18 | 1.07 | 4.39 | 0.495 | 0.493 | -1.66 | -0.593 | 5.12 | -0.0269 | 14.2 | 20 | 4331 | 3.02 | 2.02 |
| 574.04 | 1.12 | 4.61 | -0.201 | 0.488 | -2.34 | -1.14 | -- | -0.178 | 13.7 | 20.4 | 15853 | 3.25 | 2 |
| 521.44 | 1.06 | 4.39 | 0.492 | 0.492 | -1.66 | -- | 5.16 | -0.0215 | 14.3 | 20 | 4332 | 2.98 | 2.03 |
| 560.92 | 1.1 | 4.62 | -0.352 | 0.512 | -2.43 | -- | -- | -0.287 | 13.4 | 19.88 | 15787 | 3.53 | 2.82 |
| 533.93 | 1.08 | 4.4 | 0.457 | -- | -1.9 | -- | 5.65 | -0.0489 | -- | 20.01 | 4382 | 2.58 | 2.03 |
| 700.95 | 1.24 | 4.85 | -2.65 | 0.567 | -- | -0.635 | -- | -1.33 | 14.8 | -- | -- | -- | -- |
| 702.33 | 1.24 | 4.85 | -2.66 | 0.564 | -- | -- | -- | -1.33 | 14.8 | -- | -- | -- | -- |
| 572.13 | 1.11 | 4.63 | -0.367 | -- | -2.38 | -- | -- | -0.291 | -- | 19.85 | 15775 | 4.1 | 2.81 |
| 555.37 | 1.1 | 4.59 | -- | 0.494 | -2.72 | -- | -- | -0.207 | 14.5 | 19.8 | 15719 | 4.05 | 3.62 |
| 720.8 | 1.25 | 4.85 | -2.69 | -- | -- | -- | -- | -1.35 | -- | -- | -- | -- | -- |
| 889.45 | 1.4 | 4.78 | -- | 0.616 | -- | -- | -- | -1.04 | 14.8 | -- | -- | -- | -- |
| 570.52 | 1.11 | 4.63 | -- | -- | -2.62 | -- | -- | -0.279 | -- | 19.85 | 15780 | 4.9 | 2.55 |
| 911.47 | 1.41 | 4.79 | -- | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 520.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 2 | 520.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 38 | 531.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 39 | 531.97 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 74 | 535.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 7 |
| 75 | 535.78 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 129 | 537.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 141 | 537.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 150 | 538.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 157 | 538.51 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 183 | 539.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 293 | 544.29 | radiation | 10 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 321 | 545.69 | radiation | 1 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 354 | 547.08 | radiation | 1 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 362 | 547.29 | radiation | 30 | 4320 | > th | dose independent | sin | 12 | NA |
| 374 | 547.90 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 392 | 548.35 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 393 | 548.37 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 7 |
| 394 | 548.38 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 396 | 548.38 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 11 |
| 406 | 548.48 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 417 | 548.69 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 447 | 549.50 | radiation | 10 | 4320 | > th | dose dependent | rect. | 15 | 15 |
| 451 | 549.57 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 529 | 551.03 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 538 | 551.21 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 559 | 551.87 | temperature | 20 | 14400 | > th | dose independent | sin | 10 | NA |
| 569 | 552.07 | temperature | 20 | 14400 | < th | dose independent | sin | 10 | NA |
| 628 | 553.31 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 20 |
| 709 | 555.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 767 | 556.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 19 |
| 768 | 556.55 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 15 |
| 816 | 557.02 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 837 | 557.44 | radiation | 20 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 865 | 557.70 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 2 |
| 877 | 557.88 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 19 |
| 886 | 558.08 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 967 | 559.13 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 978 | 559.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 19 |
| 997 | 559.49 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 9 |
| 998 | 559.53 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 999 | 559.54 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 7 |