Os04g0618100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0618100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.64 | 0.649 | 3.47 | -0.134 | 0.539 | -1.91 | -0.171 | -2.87 | 0.402 | 17.2 | 19.48 | 4010 | -- | -- |
| 192.98 | 0.647 | 3.54 | -0.167 | 0.561 | -0.85 | -0.268 | -- | 0.387 | 17.3 | 21.01 | 2816 | -- | -- |
| 190.7 | 0.643 | 3.47 | -0.135 | 0.536 | -1.97 | -- | -2.98 | 0.404 | 17.2 | 19.4 | 4011 | -- | -- |
| 193.13 | 0.647 | 3.54 | -0.142 | 0.537 | -0.817 | -- | -- | 0.383 | 17.2 | 21.02 | 2718 | -- | -- |
| 205.27 | 0.667 | 3.47 | -0.103 | -- | -1.83 | -- | -2.71 | 0.399 | -- | 19.45 | 3600 | -- | -- |
| 200.68 | 0.664 | 3.51 | 0.191 | 0.508 | -- | -0.175 | -- | 0.522 | 17.3 | -- | -- | -- | -- |
| 200.75 | 0.664 | 3.51 | 0.191 | 0.507 | -- | -- | -- | 0.521 | 17.3 | -- | -- | -- | -- |
| 207.36 | 0.671 | 3.54 | -0.179 | -- | -0.797 | -- | -- | 0.368 | -- | 21 | 3475 | -- | -- |
| 193.51 | 0.648 | 3.54 | -- | 0.536 | -0.72 | -- | -- | 0.41 | 17.2 | 21.04 | 2693 | -- | -- |
| 214.14 | 0.684 | 3.5 | 0.174 | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
| 201.71 | 0.664 | 3.51 | -- | 0.503 | -- | -- | -- | 0.5 | 17.3 | -- | -- | -- | -- |
| 207.28 | 0.671 | 3.53 | -- | -- | -0.772 | -- | -- | 0.397 | -- | 22.1 | 1861 | -- | -- |
| 214.94 | 0.684 | 3.51 | -- | -- | -- | -- | -- | 0.489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.62 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 9 |
| 3 | 188.35 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 17 |
| 8 | 188.50 | wind | 1 | 90 | > th | dose independent | rect. | 23 | 12 |
| 14 | 188.70 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 4 |
| 28 | 189.25 | wind | 1 | 90 | < th | dose independent | sin | 4 | NA |
| 29 | 189.45 | wind | 7 | 720 | < th | dose independent | rect. | 17 | 14 |
| 33 | 189.54 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 37 | 189.76 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 10 |
| 40 | 189.80 | wind | 3 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 45 | 189.87 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 55 | 190.04 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 58 | 190.09 | wind | 5 | 720 | < th | dose independent | rect. | 18 | 11 |
| 61 | 190.14 | wind | 1 | 90 | > th | dose independent | rect. | 1 | 10 |
| 65 | 190.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 72 | 190.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 74 | 190.25 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 75 | 190.25 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 91 | 190.30 | humidity | 70 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 94 | 190.37 | temperature | 20 | 4320 | < th | dose dependent | rect. | 12 | 17 |
| 127 | 190.48 | wind | 1 | 90 | > th | dose independent | sin | 4 | NA |
| 133 | 190.51 | humidity | 90 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 151 | 190.58 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 21 |
| 152 | 190.59 | humidity | 70 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 154 | 190.60 | humidity | 70 | 4320 | > th | dose independent | rect. | 5 | 7 |
| 161 | 190.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 165 | 190.61 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 15 |
| 168 | 190.62 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 178 | 190.64 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 13 |
| 179 | 190.64 | wind | 1 | 90 | < th | dose dependent | sin | 4 | NA |
| 184 | 190.65 | temperature | 20 | 4320 | < th | dose dependent | sin | 15 | NA |
| 207 | 190.68 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 209 | 190.69 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 252 | 190.76 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 256 | 190.77 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 19 |
| 267 | 190.81 | humidity | 80 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 269 | 190.81 | wind | 3 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 270 | 190.81 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 14 |
| 274 | 190.82 | humidity | 80 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 287 | 190.84 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 292 | 190.85 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 293 | 190.85 | humidity | 70 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 320 | 190.89 | humidity | 70 | 4320 | > th | dose independent | sin | 7 | NA |
| 321 | 190.89 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 4 | 1 |
| 323 | 190.89 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 330 | 190.91 | humidity | 90 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 338 | 190.91 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 18 |
| 346 | 190.92 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 360 | 190.93 | humidity | 90 | 4320 | < th | dose dependent | rect. | 4 | 9 |
| 366 | 190.94 | humidity | 80 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 368 | 190.94 | wind | 9 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 377 | 190.95 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 443 | 191.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 457 | 191.02 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 460 | 191.03 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 472 | 191.04 | humidity | 90 | 4320 | < th | dose dependent | rect. | 24 | 13 |
| 478 | 191.05 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 23 |
| 482 | 191.05 | humidity | 50 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 491 | 191.06 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 492 | 191.06 | humidity | 50 | 4320 | > th | dose dependent | rect. | 5 | 7 |
| 506 | 191.08 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 519 | 191.09 | humidity | 70 | 4320 | < th | dose independent | sin | 7 | NA |
| 562 | 191.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 13 |
| 563 | 191.13 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 620 | 191.18 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 627 | 191.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 654 | 191.21 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 691 | 191.25 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 706 | 191.26 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 12 | 18 |
| 709 | 191.26 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 22 |
| 720 | 191.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 730 | 191.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 773 | 191.32 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 785 | 191.33 | humidity | 90 | 4320 | < th | dose dependent | sin | 4 | NA |
| 795 | 191.34 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 808 | 191.34 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 823 | 191.35 | humidity | 80 | 4320 | < th | dose dependent | sin | 6 | NA |
| 882 | 191.38 | wind | 1 | 90 | > th | dose independent | rect. | 12 | 23 |
| 923 | 191.41 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 934 | 191.42 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 939 | 191.42 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 15 | NA |