Os04g0617900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Germin-like protein precursor.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0617900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Germin-like protein precursor.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 313.02 | 0.831 | 3.04 | -0.046 | 0.0127 | 8.01 | 0.838 | -43.3 | -0.0913 | 6.91 | 1005 | 22 | 4.43 | 3.57 |
| 352.72 | 0.881 | 3.01 | 0.248 | 0.114 | 1.91 | 0.117 | -- | -0.117 | 11.5 | 1008 | 30 | 5.9 | 3.82 |
| 311.17 | 0.828 | 3.05 | -0.0828 | 0.114 | 8.9 | -- | -48.2 | -0.0987 | 12.1 | 1004 | 9 | 5.19 | 3.24 |
| 340.79 | 0.86 | 3.01 | 0.288 | 0.00845 | 2.36 | -- | -- | -0.0873 | 11.6 | 1009 | 25 | 5.77 | 4.11 |
| 310.77 | 0.821 | 3.07 | -0.193 | -- | 11 | -- | -59.6 | -0.0835 | -- | 1004 | 11 | 5.83 | 2.17 |
| 368.92 | 0.9 | 3.02 | 0.235 | 0.21 | -- | 0.172 | -- | -0.168 | 8.82 | -- | -- | -- | -- |
| 369.01 | 0.9 | 3.02 | 0.241 | 0.21 | -- | -- | -- | -0.168 | 8.78 | -- | -- | -- | -- |
| 340.69 | 0.86 | 3.01 | 0.252 | -- | 2.46 | -- | -- | -0.0838 | -- | 1009 | 25 | 5.79 | 4.08 |
| 342.41 | 0.862 | 3.01 | -- | 0.00911 | 2.46 | -- | -- | -0.108 | 11.6 | 1009 | 26 | 5.77 | 4.08 |
| 371.51 | 0.901 | 3.02 | 0.241 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 370.55 | 0.9 | 3.02 | -- | 0.21 | -- | -- | -- | -0.195 | 8.7 | -- | -- | -- | -- |
| 342.36 | 0.862 | 3.01 | -- | -- | 2.49 | -- | -- | -0.111 | -- | 1009 | 23 | 5.8 | 4.08 |
| 373.04 | 0.902 | 3.03 | -- | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 320.02 | atmosphere | 1005.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 6 | 320.81 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 29 | 330.54 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 4 | 6 |
| 37 | 332.48 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 2 | 8 |
| 52 | 334.26 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 60 | 336.13 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 68 | 337.44 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 83 | 338.22 | wind | 7.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 85 | 338.35 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 22 | 3 |
| 90 | 338.73 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 24 | 11 |
| 94 | 338.85 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 21 | 11 |
| 95 | 338.87 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 99 | 338.90 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 1 |
| 100 | 338.90 | wind | 7.0 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 102 | 338.90 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 106 | 339.10 | wind | 7.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 134 | 339.97 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 10 | 4 |
| 166 | 340.59 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 170 | 340.79 | wind | 7.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 199 | 341.82 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 202 | 342.03 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 203 | 342.05 | wind | 7.0 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 205 | 342.13 | wind | 7.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 215 | 342.39 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 221 | 342.44 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 231 | 342.47 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 242 | 342.52 | wind | 5.0 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 279 | 342.77 | wind | 5.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 297 | 342.96 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 300 | 342.96 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 302 | 343.00 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 310 | 343.07 | wind | 7.0 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 315 | 343.08 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 324 | 343.14 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 336 | 343.24 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 369 | 343.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 375 | 343.48 | wind | 5.0 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 387 | 343.53 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 432 | 343.71 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 547 | 344.03 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 7 |
| 596 | 344.22 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 620 | 344.31 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 0 | NA |
| 642 | 344.38 | humidity | 50.0 | 4320 | > th | dose independent | sin | 5 | NA |
| 664 | 344.45 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 686 | 344.50 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 3 | 12 |
| 688 | 344.51 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 10 | 4 |
| 709 | 344.52 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 21 | 18 |
| 713 | 344.53 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 719 | 344.54 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 1 | 14 |
| 726 | 344.56 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 23 | 16 |
| 747 | 344.59 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 758 | 344.62 | humidity | 50.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 836 | 344.78 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 0 | NA |
| 861 | 344.83 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 874 | 344.86 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 0 | NA |
| 903 | 344.91 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 958 | 345.01 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 21 | 14 |