Os04g0617800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1).
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Os04g0617800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.09 | 0.278 | 11.9 | -0.903 | 0.245 | 0.688 | 0.0194 | -0.086 | -0.366 | 22 | 25.5 | 10 | -- | -- |
| 34.97 | 0.278 | 11.9 | -0.893 | 0.249 | 0.688 | 0.0282 | -- | -0.363 | 21.9 | 25.5 | 10 | -- | -- |
| 34.97 | 0.278 | 11.9 | -0.904 | 0.25 | 0.696 | -- | -0.0906 | -0.366 | 22 | 25.5 | 10 | -- | -- |
| 34.98 | 0.277 | 11.9 | -0.895 | 0.249 | 0.688 | -- | -- | -0.364 | 21.9 | 25.5 | 10 | -- | -- |
| 38.45 | 0.289 | 11.8 | -0.871 | -- | 0.591 | -- | 0.105 | -0.357 | -- | 25.5 | 18 | -- | -- |
| 41.81 | 0.303 | 11.8 | -0.791 | 0.297 | -- | 0.269 | -- | -0.323 | 18.3 | -- | -- | -- | -- |
| 41.99 | 0.303 | 11.8 | -0.794 | 0.298 | -- | -- | -- | -0.323 | 18.4 | -- | -- | -- | -- |
| 37.96 | 0.287 | 11.9 | -0.892 | -- | 0.569 | -- | -- | -0.39 | -- | 24.2 | 113 | -- | -- |
| 55.28 | 0.348 | 11.8 | -- | 0.241 | 0.471 | -- | -- | -0.253 | 20.4 | 25.53 | 7 | -- | -- |
| 46.61 | 0.319 | 11.8 | -0.802 | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
| 58.62 | 0.358 | 11.8 | -- | 0.309 | -- | -- | -- | -0.234 | 18.2 | -- | -- | -- | -- |
| 58.43 | 0.356 | 11.8 | -- | -- | 0.436 | -- | -- | -0.274 | -- | 24.3 | 118 | -- | -- |
| 63.59 | 0.372 | 11.8 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.62 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 2 | 30.87 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 3 | 30.96 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 5 | 31.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 12 | 31.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 24 | 31.60 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 49 | 32.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 56 | 32.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 77 | 32.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 117 | 32.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 170 | 32.86 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 203 | 32.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 213 | 33.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 216 | 33.04 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 12 |
| 233 | 33.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 243 | 33.15 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 286 | 33.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 314 | 33.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 354 | 33.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 356 | 33.46 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 6 |
| 387 | 33.59 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 402 | 33.63 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 419 | 33.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 453 | 33.77 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 11 |
| 474 | 33.81 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 19 |
| 476 | 33.82 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 565 | 34.01 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 671 | 34.20 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 793 | 34.43 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 15 |
| 801 | 34.44 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 16 |
| 848 | 34.53 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 14 |
| 927 | 34.63 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 987 | 34.70 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 16 |