Os04g0617600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cdc48 cell division control protein 48, AAA family.
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Os04g0617600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cdc48 cell division control protein 48, AAA family.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.92 | 0.181 | 11.6 | 0.475 | 0.208 | -0.361 | -0.0514 | 0.751 | 0.235 | 1.18 | 21.7 | 2003 | -- | -- |
| 16.09 | 0.187 | 11.7 | 0.285 | 0.217 | -0.419 | -0.0467 | -- | 0.19 | 0.806 | 21.4 | 2086 | -- | -- |
| 14.93 | 0.18 | 11.6 | 0.475 | 0.208 | -0.36 | -- | 0.748 | 0.235 | 1.27 | 21.71 | 1995 | -- | -- |
| 15.91 | 0.186 | 11.7 | 0.388 | 0.22 | -0.54 | -- | -- | 0.188 | 1.67 | 18.9 | 4032 | -- | -- |
| 17.33 | 0.194 | 11.6 | 0.478 | -- | -0.35 | -- | 0.794 | 0.241 | -- | 22.1 | 1637 | -- | -- |
| 21.06 | 0.215 | 11.7 | 0.077 | 0.194 | -- | 0.0261 | -- | 0.0582 | 1.62 | -- | -- | -- | -- |
| 21.06 | 0.215 | 11.7 | 0.0762 | 0.194 | -- | -- | -- | 0.0581 | 1.58 | -- | -- | -- | -- |
| 18.47 | 0.2 | 11.6 | 0.407 | -- | -0.571 | -- | -- | 0.194 | -- | 19 | 4790 | -- | -- |
| 17.16 | 0.193 | 11.7 | -- | 0.234 | -0.328 | -- | -- | 0.151 | 1.23 | 22.1 | 1126 | -- | -- |
| 23.35 | 0.226 | 11.7 | 0.084 | -- | -- | -- | -- | 0.0623 | -- | -- | -- | -- | -- |
| 21.22 | 0.215 | 11.7 | -- | 0.195 | -- | -- | -- | 0.0496 | 1.59 | -- | -- | -- | -- |
| 19.92 | 0.208 | 11.7 | -- | -- | -0.305 | -- | -- | 0.139 | -- | 22.1 | 1519 | -- | -- |
| 23.54 | 0.226 | 11.7 | -- | -- | -- | -- | -- | 0.053 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 4 | 14.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 11 | 14.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 18 | 14.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 30 | 14.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 47 | 14.63 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 57 | 14.64 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 62 | 14.64 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 200 | 14.75 | temperature | 15 | 1440 | > th | dose dependent | sin | 14 | NA |
| 201 | 14.75 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 298 | 14.81 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 415 | 14.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 446 | 14.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 469 | 14.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 556 | 14.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 907 | 15.11 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 953 | 15.13 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |