Os04g0617400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0617400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.25 | 0.731 | 6.2 | -1.4 | 1.57 | -1.61 | -0.0321 | 1.3 | -1.08 | 3.36 | 51.25 | 1459 | 2.7 | 0.95 |
| 243.51 | 0.727 | 6.2 | -1.11 | 1.56 | -2.04 | -0.265 | -- | -0.994 | 3.4 | 58.61 | 1459 | 2.66 | 0.883 |
| 240.92 | 0.723 | 6.2 | -1.34 | 1.55 | -1.81 | -- | 1.36 | -1.04 | 3.33 | 55.15 | 1459 | 2.7 | 0.9 |
| 242.52 | 0.725 | 6.14 | -1.05 | 1.6 | -2.11 | -- | -- | -0.923 | 3.36 | 61.09 | 1459 | 2.65 | 0.85 |
| 377.31 | 0.905 | 6.2 | -1.34 | -- | -1.7 | -- | 1.05 | -1.08 | -- | 63.14 | 1450 | 2.53 | 1.07 |
| 319.37 | 0.838 | 6.08 | -0.501 | 1.56 | -- | -0.0792 | -- | -0.665 | 3.44 | -- | -- | -- | -- |
| 319.39 | 0.837 | 6.08 | -0.5 | 1.56 | -- | -- | -- | -0.664 | 3.43 | -- | -- | -- | -- |
| 378.94 | 0.907 | 6.17 | -1.07 | -- | -1.7 | -- | -- | -1 | -- | 65.29 | 1450 | 2.44 | 1.07 |
| 267.5 | 0.762 | 6.1 | -- | 1.6 | -2.05 | -- | -- | -0.72 | 3.39 | 68.23 | 1461 | 2.67 | 0.835 |
| 455.23 | 0.997 | 6.08 | -0.434 | -- | -- | -- | -- | -0.623 | -- | -- | -- | -- | -- |
| 325.97 | 0.845 | 6.07 | -- | 1.55 | -- | -- | -- | -0.608 | 3.44 | -- | -- | -- | -- |
| 403.79 | 0.936 | 6.12 | -- | -- | -1.33 | -- | -- | -0.799 | -- | 62.96 | 1456 | 2.03 | 1.16 |
| 460.19 | 1 | 6.07 | -- | -- | -- | -- | -- | -0.575 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 263.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 7 | 263.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 8 | 263.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 26 | 264.47 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 35 | 264.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 46 | 264.93 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 69 | 265.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 80 | 265.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 81 | 265.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 93 | 265.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 130 | 265.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 163 | 266.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 353 | 267.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 354 | 267.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 362 | 267.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 394 | 267.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 406 | 267.79 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 423 | 267.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 558 | 268.78 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 692 | 269.58 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 713 | 269.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 753 | 270.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 761 | 270.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 775 | 270.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 781 | 270.19 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 800 | 270.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 806 | 270.36 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 828 | 270.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 862 | 270.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 897 | 270.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 945 | 271.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |