Os04g0616400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like serine/threonine kinase.
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Os04g0616400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like serine/threonine kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.89 | 0.448 | 5.75 | -3.1 | 0.917 | -3.16 | 0.728 | -1.13 | 0.348 | 2.42 | 18.88 | 4220 | -- | -- |
| 90.93 | 0.444 | 5.77 | -3.07 | 0.925 | -2.78 | 0.742 | -- | 0.367 | 2.43 | 18.55 | 4255 | -- | -- |
| 91.08 | 0.444 | 5.71 | -3.08 | 0.919 | -4.03 | -- | -2.51 | 0.378 | 2.52 | 18.27 | 4685 | -- | -- |
| 92.3 | 0.447 | 5.79 | -3.33 | 0.99 | -3.27 | -- | -- | 0.285 | 2.84 | 18.84 | 6247 | -- | -- |
| 141.17 | 0.553 | 5.7 | -3.05 | -- | -3.94 | -- | -2.58 | 0.446 | -- | 18.4 | 4062 | -- | -- |
| 157.96 | 0.589 | 5.7 | -2.03 | 0.977 | -- | 0.517 | -- | 0.697 | 2.52 | -- | -- | -- | -- |
| 158.91 | 0.59 | 5.7 | -2.05 | 0.98 | -- | -- | -- | 0.694 | 2.57 | -- | -- | -- | -- |
| 139.53 | 0.55 | 5.77 | -2.93 | -- | -2.92 | -- | -- | 0.384 | -- | 18.97 | 2494 | -- | -- |
| 259.54 | 0.754 | 5.66 | -- | 0.971 | -1.44 | -- | -- | 0.888 | 2.47 | 18.84 | 6247 | -- | -- |
| 215.2 | 0.685 | 5.69 | -2.01 | -- | -- | -- | -- | 0.719 | -- | -- | -- | -- | -- |
| 269.36 | 0.768 | 5.65 | -- | 0.94 | -- | -- | -- | 0.922 | 2.54 | -- | -- | -- | -- |
| 306.57 | 0.815 | 5.66 | -- | -- | -1.61 | -- | -- | 0.891 | -- | 18.1 | 1010 | -- | -- |
| 321.29 | 0.837 | 5.64 | -- | -- | -- | -- | -- | 0.941 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.72 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 5 | 86.14 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 12 | 86.23 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 18 | 86.61 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 21 | 86.64 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 31 | 87.69 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 33 | 88.04 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 35 | 88.16 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 38 | 88.56 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 16 |
| 42 | 88.76 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 47 | 89.03 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 7 |
| 198 | 92.88 | humidity | 50 | 43200 | < th | dose dependent | sin | 8 | NA |
| 205 | 93.00 | humidity | 70 | 43200 | < th | dose dependent | sin | 11 | NA |
| 206 | 93.00 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 15 |
| 214 | 93.09 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 240 | 93.32 | temperature | 20 | 4320 | < th | dose dependent | sin | 4 | NA |
| 254 | 93.44 | humidity | 50 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 273 | 93.55 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 277 | 93.58 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 284 | 93.64 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 287 | 93.65 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 323 | 93.86 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 336 | 93.91 | humidity | 90 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 349 | 93.95 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 361 | 94.04 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 375 | 94.13 | temperature | 20 | 4320 | < th | dose dependent | rect. | 12 | 22 |
| 380 | 94.15 | humidity | 90 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 390 | 94.17 | temperature | 20 | 4320 | < th | dose dependent | rect. | 8 | 23 |
| 394 | 94.18 | humidity | 50 | 14400 | < th | dose dependent | rect. | 8 | 5 |
| 415 | 94.20 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 423 | 94.23 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 424 | 94.23 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 437 | 94.27 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 487 | 94.42 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 512 | 94.52 | temperature | 20 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 516 | 94.52 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 21 |
| 525 | 94.57 | temperature | 15 | 4320 | < th | dose independent | rect. | 2 | 3 |
| 594 | 94.74 | humidity | 70 | 43200 | < th | dose independent | sin | 10 | NA |
| 604 | 94.77 | humidity | 60 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 641 | 94.88 | humidity | 70 | 43200 | > th | dose independent | sin | 10 | NA |
| 690 | 95.03 | humidity | 60 | 43200 | < th | dose independent | sin | 12 | NA |
| 701 | 95.05 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 708 | 95.06 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 750 | 95.20 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 766 | 95.20 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 825 | 95.29 | humidity | 50 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 923 | 95.45 | temperature | 15 | 4320 | > th | dose independent | rect. | 2 | 5 |