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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0616200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.0412) R2 : 0.355
β1 : -1.31 (0.151) R2dD : 0.112 R2D : 0.132
β2 : 0.897 (0.107) R2dC : 0.0993 R2C : 0.0672
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.741 (0.088) R2dN8 : 0.135 R2N8 : 0.14
σ : 0.775
deviance : 273.59
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
253.1 0.747 3.75 -2.43 0.557 1.36 -0.508 -6.82 0.479 16.1 25.7 656 -- --
262.88 0.755 3.63 -1.47 0.786 0.62 -0.695 -- 0.724 16.7 25.7 847 -- --
253.04 0.741 3.76 -2.5 0.528 1.46 -- -8.34 0.487 16.5 26.2 609 -- --
264.59 0.758 3.64 -1.46 0.812 0.612 -- -- 0.714 16.7 25.71 892 -- --
262.83 0.755 3.77 -2.65 -- 1.84 -- -8.84 0.419 -- 25.8 527 -- --
272.2 0.773 3.64 -1.32 0.901 -- -0.753 -- 0.745 17.3 -- -- -- --
273.59 0.775 3.64 -1.31 0.897 -- -- -- 0.741 17.4 -- -- -- --
281.35 0.781 3.64 -1.52 -- 1.08 -- -- 0.658 -- 25.1 481 -- --
317.32 0.834 3.6 -- 1.02 -0.338 -- -- 0.899 17.1 25.71 892 -- --
315.51 0.83 3.63 -1.34 -- -- -- -- 0.719 -- -- -- -- --
319.14 0.836 3.6 -- 0.919 -- -- -- 0.888 17.4 -- -- -- --
340.99 0.86 3.6 -- -- 0.874 -- -- 0.835 -- 25.37 449 -- --
363.21 0.89 3.59 -- -- -- -- -- 0.868 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 236.37 temperature 25.0 30 > th dose independent rect. 16 3
3 241.02 atmosphere 1005.0 30 > th dose dependent rect. 16 3
6 242.11 temperature 25.0 30 > th dose dependent rect. 16 3
7 242.40 temperature 25.0 30 > th dose dependent rect. 16 12
8 242.44 temperature 25.0 30 > th dose dependent rect. 16 10
11 242.63 temperature 25.0 30 > th dose dependent rect. 16 14
17 242.87 temperature 30.0 720 > th dose independent rect. 13 1
18 242.88 temperature 25.0 30 > th dose dependent rect. 16 7
19 242.92 radiation 20.0 270 > th dose independent rect. 14 2
25 243.25 radiation 20.0 270 > th dose independent rect. 14 17
45 243.87 temperature 25.0 30 > th dose independent rect. 16 7
68 244.89 atmosphere 1000.0 30 > th dose dependent rect. 14 5
69 245.02 atmosphere 1005.0 30 > th dose independent rect. 16 3
72 246.01 radiation 10.0 270 > th dose independent rect. 16 1
76 246.33 temperature 25.0 270 > th dose dependent rect. 13 11
84 246.48 wind 7.0 30 < th dose independent rect. 16 3
146 247.86 atmosphere 1005.0 270 > th dose independent rect. 14 3
151 247.94 temperature 25.0 90 > th dose independent rect. 13 10
152 247.95 radiation 10.0 270 > th dose dependent rect. 14 17
155 248.13 temperature 25.0 10 > th dose independent rect. 14 9
156 248.22 wind 9.0 30 < th dose dependent rect. 16 3
158 248.24 radiation 20.0 270 > th dose independent sin 14 NA
164 248.41 temperature 30.0 30 < th dose independent rect. 16 3
166 248.45 radiation 10.0 270 > th dose dependent rect. 14 3
187 248.79 humidity 90.0 30 < th dose independent rect. 16 3
209 249.14 radiation 10.0 10 < th dose independent rect. 16 3
215 249.43 wind 9.0 30 < th dose independent rect. 19 21
219 249.56 temperature 25.0 270 > th dose independent rect. 13 6
223 249.59 radiation 10.0 10 < th dose independent rect. 9 10
227 249.60 humidity 50.0 30 > th dose independent rect. 19 21
231 249.65 temperature 25.0 90 > th dose dependent sin 14 NA
233 249.67 precipitation 0.1 30 < th dose independent rect. 16 3
235 249.67 precipitation 0.1 30 < th dose dependent rect. 16 3
241 249.75 wind 1.0 30 > th dose independent rect. 16 3
242 249.75 radiation 10.0 270 > th dose dependent rect. 16 15
257 249.80 temperature 10.0 30 > th dose independent rect. 16 3
259 249.80 atmosphere 1010.0 30 < th dose independent rect. 16 3
261 249.80 radiation 40.0 30 < th dose independent rect. 16 3
262 249.80 temperature 10.0 30 > th dose independent rect. 19 21
265 249.84 humidity 50.0 30 > th dose independent rect. 16 3
288 250.09 temperature 25.0 90 < th dose independent rect. 1 10
289 250.11 radiation 10.0 270 > th dose dependent rect. 16 1
290 250.13 precipitation 0.1 30 < th dose independent rect. 19 21
292 250.13 precipitation 0.1 30 < th dose dependent rect. 19 21
295 250.17 temperature 10.0 1440 > th dose independent rect. 17 3
298 250.17 radiation 30.0 1440 < th dose independent rect. 17 3
304 250.17 temperature 10.0 1440 > th dose independent rect. 20 21
335 250.38 temperature 25.0 270 > th dose dependent sin 16 NA
359 250.52 radiation 10.0 10 < th dose independent rect. 14 5
370 250.76 wind 7.0 30 < th dose independent rect. 14 5
379 250.83 atmosphere 995.0 30 > th dose independent rect. 19 21
383 250.89 radiation 10.0 10 < th dose independent rect. 12 7
442 251.08 temperature 30.0 720 < th dose independent rect. 8 7
480 251.35 temperature 25.0 90 > th dose independent rect. 13 13
487 251.42 temperature 15.0 90 > th dose dependent rect. 13 6
490 251.45 wind 7.0 4320 > th dose dependent rect. 13 1
507 251.59 temperature 25.0 720 > th dose dependent rect. 13 1
525 251.67 radiation 40.0 10 < th dose dependent rect. 16 3
528 251.71 temperature 25.0 720 > th dose dependent rect. 11 6
570 251.95 temperature 25.0 270 < th dose independent rect. 16 6
590 252.15 wind 9.0 4320 > th dose independent rect. 13 1
632 252.25 wind 9.0 4320 < th dose independent rect. 13 1
639 252.32 atmosphere 1005.0 30 > th dose dependent rect. 16 1
640 252.33 wind 7.0 30 > th dose independent rect. 16 1
643 252.37 temperature 30.0 270 < th dose dependent rect. 19 1
658 252.40 wind 5.0 30 > th dose dependent rect. 16 1
659 252.41 atmosphere 1005.0 30 > th dose independent rect. 16 1
660 252.41 temperature 25.0 90 < th dose independent rect. 17 8
684 252.61 radiation 1.0 270 > th dose dependent sin 14 NA
689 252.64 humidity 60.0 30 > th dose independent rect. 16 1
691 252.64 temperature 25.0 720 > th dose dependent rect. 11 4
692 252.65 temperature 30.0 30 < th dose independent rect. 16 1
694 252.70 humidity 70.0 30 < th dose independent rect. 16 16
725 252.83 humidity 50.0 30 > th dose dependent rect. 16 1
763 253.00 temperature 25.0 10 < th dose independent rect. 16 8
781 253.03 wind 9.0 30 < th dose independent rect. 19 19
782 253.03 radiation 40.0 270 < th dose dependent sin 14 NA
783 253.04 temperature 25.0 90 > th dose independent rect. 2 11
804 253.19 temperature 30.0 720 > th dose independent rect. 18 20
815 253.29 temperature 30.0 30 < th dose dependent rect. 16 1
823 253.31 temperature 30.0 90 < th dose independent rect. 19 20
834 253.36 radiation 20.0 30 < th dose dependent rect. 16 1
840 253.40 radiation 10.0 10 < th dose independent rect. 16 1
854 253.43 radiation 20.0 270 < th dose independent sin 14 NA
855 253.43 temperature 25.0 90 < th dose independent rect. 12 13
856 253.44 wind 1.0 30 > th dose independent rect. 14 5
860 253.45 radiation 40.0 30 < th dose independent rect. 11 8
869 253.48 radiation 40.0 30 < th dose dependent rect. 9 10
895 253.54 radiation 40.0 10 < th dose dependent rect. 11 8
896 253.54 radiation 40.0 720 < th dose dependent rect. 13 16
897 253.55 temperature 25.0 10 < th dose independent rect. 13 11
901 253.56 temperature 25.0 720 > th dose dependent sin 22 NA
933 253.64 radiation 40.0 30 < th dose independent rect. 14 5
934 253.64 humidity 50.0 30 > th dose dependent rect. 16 3
935 253.64 radiation 30.0 30 < th dose dependent rect. 19 14
957 253.76 humidity 90.0 30 < th dose independent rect. 14 5
964 253.80 temperature 30.0 270 < th dose independent rect. 17 21
968 253.83 humidity 50.0 30 > th dose independent rect. 19 19
977 253.85 precipitation 0.1 30 < th dose independent rect. 14 5
979 253.85 precipitation 0.1 30 < th dose dependent rect. 14 5