Os04g0615900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os04g0615900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.69 | 0.314 | 7.12 | 1.34 | 0.129 | -1.37 | 0.677 | 3.26 | 0.314 | 4.79 | 20.06 | 319 | -- | -- |
| 50.34 | 0.33 | 7.16 | 0.768 | 0.194 | -1.47 | -0.0446 | -- | 0.207 | 2.12 | 15.77 | 390 | -- | -- |
| 45.4 | 0.314 | 7.14 | 1.24 | 0.142 | -1.36 | -- | 2.66 | 0.286 | 3.09 | 19.97 | 345 | -- | -- |
| 49.87 | 0.329 | 7.2 | 0.756 | 0.239 | -1.38 | -- | -- | 0.132 | 2.72 | 15.9 | 417 | -- | -- |
| 46.19 | 0.317 | 7.13 | 1.27 | -- | -1.46 | -- | 2.75 | 0.307 | -- | 20.15 | 316 | -- | -- |
| 74.29 | 0.404 | 7.24 | 0.434 | 0.605 | -- | 0.13 | -- | -0.0741 | 4.84 | -- | -- | -- | -- |
| 74.33 | 0.404 | 7.24 | 0.433 | 0.605 | -- | -- | -- | -0.0748 | 4.83 | -- | -- | -- | -- |
| 51.29 | 0.334 | 7.19 | 0.782 | -- | -1.52 | -- | -- | 0.169 | -- | 16.4 | 323 | -- | -- |
| 63 | 0.37 | 7.23 | -- | 0.292 | -0.914 | -- | -- | 0.0123 | 3.89 | 19.58 | 363 | -- | -- |
| 93.7 | 0.452 | 7.24 | 0.456 | -- | -- | -- | -- | -0.0591 | -- | -- | -- | -- | -- |
| 79.27 | 0.416 | 7.25 | -- | 0.613 | -- | -- | -- | -0.123 | 4.81 | -- | -- | -- | -- |
| 65.79 | 0.378 | 7.22 | -- | -- | -1.12 | -- | -- | 0.0478 | -- | 20.19 | 304 | -- | -- |
| 99.18 | 0.465 | 7.25 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 2 | 41.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 14 | 43.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 15 | 44.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 31 | 44.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 39 | 44.93 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 50 | 45.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 57 | 45.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 75 | 45.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 83 | 45.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 96 | 46.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 120 | 46.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 138 | 46.42 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 18 |
| 173 | 46.63 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 197 | 46.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 215 | 46.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 225 | 46.86 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 333 | 47.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 14 |
| 398 | 47.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 408 | 47.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 482 | 47.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 490 | 47.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 509 | 47.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 553 | 47.56 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 582 | 47.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 586 | 47.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 654 | 47.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 705 | 47.76 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 735 | 47.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 747 | 47.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 753 | 47.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 790 | 47.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 814 | 47.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 844 | 47.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 19 |
| 878 | 47.96 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |