Os04g0615200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0615200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.06 | 0.55 | 9.48 | -0.839 | 0.244 | 1.12 | 0.609 | -0.212 | -0.0578 | 4.22 | 29.23 | 89 | -- | -- |
| 137.18 | 0.545 | 9.48 | -0.833 | 0.236 | 1.15 | 0.535 | -- | -0.0597 | 4.67 | 29.84 | 88 | -- | -- |
| 137.76 | 0.547 | 9.48 | -0.85 | 0.245 | 1.13 | -- | 0.0338 | -0.0584 | 4.45 | 29.38 | 79 | -- | -- |
| 137.74 | 0.547 | 9.48 | -0.842 | 0.254 | 1.14 | -- | -- | -0.0655 | 4.67 | 29.29 | 79 | -- | -- |
| 140.08 | 0.551 | 9.48 | -0.825 | -- | 1.23 | -- | 0.0377 | -0.048 | -- | 28.36 | 90 | -- | -- |
| 159.23 | 0.592 | 9.51 | -0.884 | 1.13 | -- | 0.347 | -- | -0.136 | 1.42 | -- | -- | -- | -- |
| 159.71 | 0.592 | 9.51 | -0.896 | 1.13 | -- | -- | -- | -0.137 | 1.4 | -- | -- | -- | -- |
| 140.08 | 0.551 | 9.48 | -0.827 | -- | 1.23 | -- | -- | -0.0481 | -- | 28.32 | 90 | -- | -- |
| 156.32 | 0.582 | 9.46 | -- | 0.223 | 1.2 | -- | -- | 0.0328 | 5.8 | 28.3 | 79 | -- | -- |
| 238.3 | 0.721 | 9.5 | -0.851 | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
| 180.86 | 0.629 | 9.49 | -- | 1.11 | -- | -- | -- | -0.0376 | 1.37 | -- | -- | -- | -- |
| 157.94 | 0.585 | 9.46 | -- | -- | 1.24 | -- | -- | 0.0453 | -- | 28 | 106 | -- | -- |
| 257.41 | 0.749 | 9.48 | -- | -- | -- | -- | -- | -0.019 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.45 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 2 | 133.65 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 3 | 133.66 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 4 | 133.69 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 9 | 134.37 | radiation | 20 | 270 | < th | dose independent | rect. | 24 | 18 |
| 11 | 134.51 | radiation | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 20 | 135.31 | radiation | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 35 | 135.82 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 23 |
| 36 | 135.87 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 7 |
| 43 | 136.14 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 62 | 136.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 90 | 137.12 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 108 | 137.46 | radiation | 20 | 90 | < th | dose dependent | sin | 0 | NA |
| 117 | 137.60 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 9 |
| 132 | 137.75 | radiation | 30 | 270 | < th | dose independent | rect. | 11 | 19 |
| 147 | 137.91 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 18 |
| 152 | 137.94 | radiation | 20 | 90 | < th | dose independent | rect. | 24 | 23 |
| 160 | 138.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 165 | 138.06 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 171 | 138.10 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 20 |
| 178 | 138.17 | temperature | 20 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 179 | 138.17 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 184 | 138.19 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 187 | 138.19 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 194 | 138.25 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 21 |
| 217 | 138.36 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 17 |
| 221 | 138.37 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 24 | 23 |
| 229 | 138.42 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 231 | 138.42 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 22 |
| 277 | 138.62 | radiation | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 280 | 138.63 | wind | 7 | 270 | < th | dose independent | rect. | 18 | 23 |
| 281 | 138.63 | radiation | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 325 | 138.83 | radiation | 10 | 90 | < th | dose independent | sin | 0 | NA |
| 354 | 138.92 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 369 | 138.99 | temperature | 20 | 14400 | < th | dose independent | sin | 20 | NA |
| 373 | 139.00 | radiation | 10 | 10 | < th | dose dependent | sin | 23 | NA |
| 401 | 139.11 | radiation | 1 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 412 | 139.13 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 422 | 139.16 | temperature | 20 | 14400 | > th | dose independent | sin | 21 | NA |
| 445 | 139.24 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 479 | 139.32 | radiation | 20 | 90 | < th | dose independent | rect. | 8 | 23 |
| 495 | 139.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 521 | 139.50 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 591 | 139.72 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |
| 654 | 139.87 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 683 | 139.96 | radiation | 1 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 706 | 139.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 708 | 139.99 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 714 | 140.01 | temperature | 25 | 10 | > th | dose dependent | sin | 2 | NA |
| 741 | 140.08 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 22 |
| 772 | 140.15 | radiation | 10 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 781 | 140.17 | radiation | 40 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 826 | 140.26 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 852 | 140.31 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 923 | 140.32 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |