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Os04g0613800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Methyl-CpG binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0169) R2 : 0.602
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.12 (0.0439) R2dC : 0.575 R2C : 0.555
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.229 (0.0356) R2dN8 : 0.0466 R2N8 : 0.0271
σ : 0.319
deviance : 46.45
__
_____
C
peak time of C : 19.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.09 0.258 11.7 0.547 0.519 -1.58 0.37 -0.158 0.238 1.58 1.071 703 -- --
29.87 0.255 11.7 0.543 0.597 -1.56 0.333 -- 0.237 1.45 1.011 675 -- --
30.3 0.256 11.7 0.528 0.585 -1.55 -- 0.112 0.231 1.44 0.9795 677 -- --
30.33 0.256 11.7 0.532 0.598 -1.56 -- -- 0.234 1.47 1 675 -- --
34.15 0.272 11.7 0.529 -- -1.54 -- -0.343 0.246 -- 1.08 870 -- --
34.83 0.277 11.8 0.663 1.13 -- 0.286 -- 0.301 19.1 -- -- -- --
35.04 0.277 11.7 0.658 1.13 -- -- -- 0.302 19.1 -- -- -- --
34.09 0.272 11.7 0.511 -- -1.57 -- -- 0.233 -- 1.02 866 -- --
37.33 0.285 11.7 -- 0.617 -1.66 -- -- 0.187 1.99 0.4958 687 -- --
102.43 0.473 11.7 0.636 -- -- -- -- 0.282 -- -- -- -- --
46.45 0.319 11.8 -- 1.12 -- -- -- 0.229 19.1 -- -- -- --
40.78 0.297 11.7 -- -- -1.65 -- -- 0.178 -- 0.72 875 -- --
113.11 0.496 11.7 -- -- -- -- -- 0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.68 temperature 10.0 30 > th dose dependent rect. 7 20
3 28.78 humidity 90.0 30 < th dose independent rect. 7 12
14 29.49 radiation 1.0 720 < th dose dependent rect. 1 17
15 29.50 radiation 1.0 720 < th dose dependent rect. 16 13
16 29.52 radiation 1.0 720 < th dose dependent rect. 1 19
17 29.55 radiation 1.0 720 > th dose independent rect. 13 21
18 29.55 radiation 1.0 720 < th dose dependent rect. 1 21
21 29.60 humidity 50.0 90 > th dose dependent rect. 17 14
22 29.62 radiation 1.0 720 < th dose independent rect. 1 21
23 29.64 radiation 1.0 720 < th dose dependent rect. 6 23
24 29.65 radiation 1.0 270 > th dose independent rect. 17 23
26 29.73 radiation 1.0 720 < th dose independent rect. 1 17
28 29.78 radiation 1.0 720 < th dose independent rect. 1 19
29 29.79 radiation 1.0 90 > th dose independent rect. 7 22
30 29.81 radiation 1.0 90 > th dose independent rect. 7 12
42 29.82 radiation 1.0 720 < th dose dependent rect. 1 23
45 29.85 temperature 30.0 90 < th dose independent rect. 17 14
47 29.88 radiation 1.0 720 > th dose independent rect. 15 17
50 29.88 radiation 1.0 720 < th dose dependent rect. 15 20
51 29.89 precipitation 0.1 720 < th dose independent rect. 5 14
54 29.89 precipitation 0.1 720 < th dose dependent rect. 5 14
60 29.91 radiation 1.0 720 < th dose dependent rect. 23 23
68 29.99 radiation 20.0 270 < th dose dependent rect. 16 13
78 30.02 radiation 1.0 270 < th dose independent rect. 22 23
87 30.07 radiation 1.0 720 > th dose independent rect. 4 14
113 30.15 radiation 1.0 720 < th dose independent rect. 17 12
116 30.15 radiation 1.0 720 < th dose independent rect. 6 23
119 30.16 radiation 1.0 720 > th dose independent rect. 13 5
124 30.17 humidity 90.0 30 < th dose independent rect. 7 18
125 30.17 radiation 1.0 270 < th dose independent rect. 16 19
129 30.18 humidity 70.0 10 > th dose independent rect. 17 14
131 30.18 radiation 1.0 720 > th dose independent rect. 11 23
135 30.19 humidity 80.0 10 > th dose independent rect. 3 17
143 30.20 humidity 60.0 90 > th dose independent rect. 17 14
148 30.20 radiation 1.0 720 < th dose dependent rect. 19 23
156 30.24 radiation 1.0 720 < th dose dependent rect. 21 23
166 30.27 precipitation 0.1 720 < th dose independent rect. 20 23
169 30.27 precipitation 0.1 720 < th dose dependent rect. 20 23
174 30.29 humidity 90.0 90 < th dose independent rect. 7 20
182 30.30 precipitation 0.1 720 < th dose independent rect. 7 10
185 30.30 radiation 1.0 720 < th dose dependent rect. 16 4
186 30.30 precipitation 0.1 720 < th dose dependent rect. 7 10
215 30.36 humidity 50.0 90 > th dose dependent rect. 3 17
216 30.37 radiation 1.0 720 > th dose independent sin 12 NA
218 30.37 radiation 1.0 720 < th dose dependent no NA NA
229 30.41 temperature 10.0 30 > th dose dependent rect. 7 12
245 30.43 radiation 1.0 720 < th dose dependent rect. 9 23
252 30.45 radiation 1.0 720 < th dose dependent sin 12 NA
271 30.47 radiation 1.0 720 < th dose dependent rect. 6 14
278 30.48 temperature 15.0 720 > th dose independent rect. 7 10
289 30.49 radiation 1.0 720 < th dose independent rect. 19 23
324 30.54 precipitation 0.1 270 < th dose independent rect. 13 12
337 30.54 precipitation 0.1 270 < th dose dependent rect. 13 12
351 30.57 radiation 1.0 720 < th dose independent no NA NA
352 30.57 radiation 1.0 720 < th dose independent rect. 16 4
383 30.60 temperature 25.0 90 < th dose independent rect. 11 20
396 30.62 radiation 1.0 720 > th dose independent rect. 9 23
408 30.63 humidity 80.0 90 > th dose dependent rect. 3 20
410 30.64 radiation 1.0 720 < th dose independent rect. 6 14
419 30.65 precipitation 0.1 720 < th dose independent rect. 13 6
431 30.65 precipitation 0.1 720 < th dose dependent rect. 13 6
435 30.66 radiation 1.0 720 > th dose independent rect. 7 1
459 30.68 precipitation 0.1 90 < th dose independent rect. 7 20
465 30.68 precipitation 0.1 90 < th dose dependent rect. 7 20
467 30.69 radiation 1.0 720 > th dose independent no NA NA
474 30.69 temperature 25.0 270 < th dose independent rect. 11 18
522 30.70 temperature 15.0 30 > th dose dependent rect. 9 18
543 30.73 humidity 80.0 10 > th dose independent rect. 3 10
546 30.73 radiation 1.0 720 < th dose independent rect. 6 16
562 30.75 radiation 1.0 720 < th dose independent sin 12 NA
568 30.75 radiation 1.0 720 < th dose dependent rect. 19 10
576 30.76 humidity 50.0 90 > th dose dependent rect. 3 10
580 30.76 humidity 50.0 30 > th dose dependent rect. 1 23
584 30.78 radiation 1.0 720 > th dose independent rect. 15 2
589 30.78 humidity 90.0 10 < th dose independent rect. 7 14
591 30.78 humidity 90.0 90 < th dose independent rect. 20 23
603 30.80 precipitation 0.1 90 < th dose independent rect. 7 12
609 30.80 temperature 10.0 720 > th dose dependent rect. 7 1
611 30.80 precipitation 0.1 90 < th dose dependent rect. 7 12
616 30.81 radiation 10.0 10 < th dose independent rect. 4 4
622 30.81 precipitation 0.1 720 < th dose independent rect. 5 20
624 30.81 radiation 1.0 720 < th dose dependent sin 2 NA
628 30.81 precipitation 0.1 720 < th dose dependent rect. 5 20
636 30.82 humidity 50.0 90 > th dose dependent rect. 3 20
637 30.83 precipitation 0.1 720 < th dose independent rect. 7 1
652 30.83 precipitation 0.1 720 < th dose dependent rect. 7 1
653 30.83 atmosphere 1000.0 30 > th dose dependent rect. 3 4
661 30.84 wind 7.0 30 < th dose independent rect. 7 12
681 30.85 temperature 15.0 720 > th dose independent rect. 5 14
783 30.89 temperature 15.0 90 > th dose independent rect. 7 20
785 30.89 wind 7.0 10 < th dose independent rect. 7 21
812 30.92 temperature 25.0 90 > th dose independent rect. 15 12
816 30.92 precipitation 0.1 720 < th dose independent rect. 22 19
819 30.92 precipitation 0.1 720 < th dose dependent rect. 22 19
829 30.93 humidity 70.0 30 > th dose dependent rect. 17 20
833 30.94 precipitation 0.1 270 < th dose independent rect. 4 23
843 30.94 humidity 50.0 30 > th dose dependent rect. 10 21
846 30.94 precipitation 0.1 270 < th dose dependent rect. 4 23
847 30.95 wind 7.0 720 < th dose independent rect. 7 1
848 30.95 wind 9.0 720 < th dose independent rect. 19 1
849 30.95 temperature 10.0 720 > th dose independent rect. 19 1
850 30.95 temperature 30.0 720 < th dose independent rect. 19 1
851 30.95 humidity 50.0 720 > th dose independent rect. 19 1
852 30.95 atmosphere 995.0 720 > th dose independent rect. 19 1
853 30.95 atmosphere 1015.0 720 < th dose independent rect. 19 1
854 30.95 radiation 1.0 720 < th dose independent rect. 19 1
881 30.95 temperature 10.0 720 > th dose independent rect. 20 23
884 30.95 radiation 1.0 720 < th dose dependent rect. 19 1
894 30.96 temperature 10.0 720 > th dose independent rect. 7 1
896 30.96 temperature 30.0 720 < th dose independent rect. 7 1
897 30.96 humidity 50.0 720 > th dose independent rect. 7 1
899 30.96 atmosphere 995.0 720 > th dose independent rect. 7 1
900 30.96 atmosphere 1015.0 720 < th dose independent rect. 7 1
904 30.96 temperature 10.0 720 > th dose independent rect. 8 23
917 30.97 temperature 30.0 30 < th dose dependent rect. 17 14
923 30.98 temperature 15.0 720 > th dose independent rect. 5 5
925 30.98 radiation 10.0 10 < th dose independent rect. 19 13
929 30.98 temperature 25.0 10 > th dose independent rect. 7 21
938 30.99 humidity 90.0 90 < th dose independent rect. 23 20
947 31.00 temperature 15.0 270 > th dose independent rect. 5 11
958 31.01 temperature 15.0 720 > th dose independent rect. 3 17
960 31.01 radiation 40.0 720 < th dose independent rect. 15 17
962 31.01 temperature 25.0 10 > th dose independent rect. 7 19
986 31.03 atmosphere 995.0 30 > th dose independent rect. 7 12
996 31.04 atmosphere 1005.0 90 > th dose independent rect. 3 4