FiT-DB / Search/ Help/ Sample detail

Os04g0612400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Root-specific protein (RCc2 protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.03 (0.0712) R2 : 0.769
β1 : -4.47 (0.306) R2dD : 0.165 R2D : 0.152
β2 : 4.89 (0.166) R2dC : 0.444 R2C : 0.398
β3 : -1.66 (0.229) R2dE : 0.0317 R2E : -0.0353
β4 : -3.94 (0.639) R2dD*C : 0.0195 R2D*C : 0.0168
β5 : -4.98 (1.17) R2dD*E : 0.0142 R2D*E : 0.0558
γ1 : -2.24 (0.162) R2dN8 : 0.157 R2N8 : 0.0439
σ : 1.3
deviance : 768.97
__
_____
C
peak time of C : 10.6
E
wheather : radiation
threshold : 22.4
memory length : 2957
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
768.97 1.3 9.03 -4.47 4.89 -1.66 -3.94 -4.98 -2.24 10.6 22.4 2957 -- --
808.31 1.32 9.01 -4.84 4.76 -1.66 -3.83 -- -2.38 10.5 21.88 2939 -- --
828.39 1.34 9.02 -4.6 4.9 -1.57 -- -4.8 -2.24 10.5 22.37 2876 -- --
868 1.37 9.04 -5.13 4.77 -1.66 -- -- -2.34 10.2 22.12 2977 -- --
1926.58 2.06 9.17 -5.47 -- -2.54 -- 2.1 -2.21 -- 20.99 4536 -- --
933.83 1.43 9.01 -5 4.76 -- -3.97 -- -2.1 10.6 -- -- -- --
996.79 1.48 9.01 -5.17 4.8 -- -- -- -2.11 10.4 -- -- -- --
1920.53 2.05 9.15 -5.58 -- -2.53 -- -- -2.17 -- 20.02 4560 -- --
1537.91 1.83 8.87 -- 4.71 -2.16 -- -- -1.61 10.3 40 4335 -- --
2405.84 2.29 9.14 -5.25 -- -- -- -- -2.13 -- -- -- -- --
1700.58 1.93 8.88 -- 4.83 -- -- -- -1.54 10.5 -- -- -- --
2712.79 2.43 8.85 -- -- -2.74 -- -- -0.888 -- 59.97 33481 -- --
3131.99 2.61 9.01 -- -- -- -- -- -1.55 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 743.68 wind 5.0 43200 < th dose dependent rect. 3 3
3 744.01 wind 3.0 43200 > th dose independent rect. 3 3
4 744.37 wind 3.0 43200 < th dose independent rect. 3 3
7 745.85 wind 5.0 43200 < th dose dependent rect. 4 1
11 747.07 wind 3.0 43200 < th dose independent rect. 4 1
19 749.93 wind 1.0 43200 > th dose dependent rect. 3 4
30 752.23 wind 3.0 43200 > th dose independent rect. 3 6
33 752.74 wind 3.0 43200 < th dose independent rect. 3 6
85 759.10 humidity 90.0 43200 > th dose independent rect. 9 1
89 759.29 humidity 90.0 43200 > th dose dependent rect. 9 1
91 759.32 radiation 20.0 720 < th dose independent rect. 5 5
97 759.90 humidity 70.0 14400 > th dose independent rect. 18 2
101 760.38 humidity 70.0 14400 < th dose independent rect. 18 1
102 760.72 temperature 25.0 14400 > th dose independent rect. 1 2
107 761.04 humidity 70.0 14400 > th dose independent rect. 18 13
109 761.12 humidity 70.0 14400 > th dose independent rect. 18 5
111 761.17 temperature 25.0 14400 > th dose independent rect. 1 6
120 761.32 humidity 70.0 14400 > th dose independent rect. 18 10
156 762.68 temperature 25.0 14400 < th dose independent rect. 3 1
161 763.09 temperature 25.0 14400 < th dose independent rect. 3 4
191 764.97 humidity 70.0 14400 < th dose independent rect. 18 13
196 765.12 wind 3.0 43200 > th dose independent rect. 7 1
200 765.22 temperature 25.0 14400 < th dose independent rect. 5 1
214 765.67 wind 3.0 43200 < th dose independent rect. 7 2
224 766.18 temperature 25.0 14400 > th dose dependent rect. 24 1
234 766.54 humidity 70.0 14400 < th dose independent rect. 14 17
240 766.67 humidity 70.0 14400 < th dose independent rect. 14 8
262 767.15 humidity 70.0 14400 < th dose independent rect. 11 20
264 767.25 humidity 70.0 14400 < th dose independent rect. 11 11
274 767.28 temperature 25.0 14400 < th dose independent rect. 1 7
280 767.43 humidity 70.0 14400 < th dose independent sin 15 NA
302 768.10 temperature 25.0 14400 > th dose dependent rect. 24 7
317 768.61 humidity 70.0 14400 < th dose independent rect. 11 1
339 768.74 humidity 70.0 14400 < th dose independent rect. 15 1
340 768.74 precipitation 0.1 43200 > th dose independent rect. 15 2
354 769.10 precipitation 0.1 43200 < th dose independent rect. 15 2
355 769.10 precipitation 0.1 43200 < th dose dependent rect. 15 2
396 769.99 humidity 70.0 14400 > th dose independent rect. 14 17
399 770.03 humidity 70.0 14400 > th dose independent rect. 14 9
430 770.36 humidity 70.0 14400 < th dose independent rect. 11 6
437 770.45 humidity 70.0 14400 > th dose independent sin 15 NA
448 770.68 radiation 10.0 14400 < th dose independent rect. 8 1
478 771.30 precipitation 0.1 43200 > th dose dependent rect. 15 2
495 771.80 humidity 70.0 14400 > th dose independent rect. 11 20
498 771.84 humidity 70.0 14400 > th dose independent rect. 11 12
561 772.60 temperature 30.0 14400 < th dose independent rect. 11 1
582 772.89 temperature 30.0 14400 > th dose independent rect. 11 1
618 773.51 humidity 70.0 14400 > th dose independent rect. 15 2
670 774.45 radiation 40.0 4320 < th dose dependent rect. 18 5
683 774.79 humidity 90.0 43200 < th dose independent rect. 9 1
701 775.14 radiation 30.0 14400 < th dose independent rect. 15 19
702 775.16 radiation 20.0 14400 < th dose independent rect. 12 1
708 775.41 humidity 70.0 14400 > th dose independent rect. 11 6
721 775.62 temperature 30.0 14400 < th dose independent rect. 11 3
737 775.81 radiation 40.0 1440 > th dose dependent rect. 14 20
739 775.89 radiation 1.0 4320 < th dose independent rect. 18 5
752 776.07 radiation 1.0 4320 < th dose independent rect. 18 3
756 776.20 radiation 40.0 4320 < th dose dependent rect. 18 3
759 776.24 temperature 30.0 14400 < th dose independent rect. 13 1
770 776.43 temperature 25.0 14400 < th dose independent rect. 1 1
804 776.96 radiation 30.0 14400 < th dose independent rect. 14 9
805 776.97 radiation 30.0 14400 < th dose independent rect. 14 7
814 777.02 radiation 20.0 14400 < th dose independent rect. 15 17
820 777.04 radiation 30.0 14400 < th dose independent rect. 14 14
836 777.25 radiation 40.0 4320 < th dose dependent rect. 18 7
837 777.27 wind 9.0 43200 < th dose dependent rect. 7 2
862 777.58 radiation 1.0 4320 < th dose independent rect. 18 10
882 777.75 precipitation 0.1 43200 > th dose independent rect. 9 9
884 777.76 radiation 30.0 14400 < th dose independent sin 12 NA
889 777.84 temperature 30.0 14400 > th dose independent rect. 13 1
892 777.86 radiation 30.0 14400 > th dose independent rect. 15 19
917 778.04 humidity 90.0 14400 > th dose independent rect. 1 9
925 778.11 humidity 90.0 14400 > th dose independent rect. 1 7
936 778.30 temperature 25.0 14400 > th dose dependent rect. 5 2
942 778.35 radiation 1.0 4320 > th dose independent rect. 18 1
955 778.37 radiation 10.0 1440 < th dose dependent rect. 18 13
957 778.39 radiation 30.0 14400 < th dose independent rect. 7 3
963 778.45 precipitation 0.1 43200 < th dose independent rect. 9 9
965 778.45 precipitation 0.1 43200 < th dose dependent rect. 9 9
988 778.64 radiation 30.0 14400 < th dose independent rect. 3 7
994 778.67 radiation 20.0 14400 > th dose independent rect. 16 16