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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0612100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,3-glucanase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0279) R2 : 1.57e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00496 (0.0587) R2dN8 : 2.03e-05 R2N8 : 1.57e-05
σ : 0.525
deviance : 126.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.84 0.514 3.37 0.125 0.185 0.566 -0.12 -0.2 -0.067 2.54 1006 119 -- --
119.9 0.51 3.38 0.119 0.185 0.572 -0.113 -- -0.0677 2.51 1006 118 -- --
119.89 0.51 3.38 0.127 0.184 0.565 -- -0.198 -0.0664 2.48 1006 109 -- --
119.95 0.51 3.38 0.122 0.184 0.569 -- -- -0.066 2.48 1006 118 -- --
121.86 0.514 3.37 0.133 -- 0.554 -- -0.155 -0.0597 -- 1006 100 -- --
124.39 0.523 3.36 0.0974 0.18 -- -0.0825 -- 0.0116 3.31 -- -- -- --
124.41 0.522 3.36 0.099 0.179 -- -- -- 0.0121 3.23 -- -- -- --
121.9 0.514 3.37 0.127 -- 0.556 -- -- -0.0604 -- 1006 100 -- --
120.33 0.511 3.38 -- 0.185 0.562 -- -- -0.0796 2.49 1006 107 -- --
126.24 0.525 3.36 0.107 -- -- -- -- 0.0168 -- -- -- -- --
124.67 0.522 3.36 -- 0.181 -- -- -- 0.00106 3.23 -- -- -- --
122.33 0.515 3.38 -- -- 0.548 -- -- -0.0732 -- 1006 95 -- --
126.54 0.525 3.36 -- -- -- -- -- 0.00496 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.44 humidity 60.0 4320 < th dose independent rect. 18 1
2 111.46 humidity 60.0 4320 > th dose independent rect. 18 9
3 111.47 humidity 60.0 4320 > th dose independent rect. 18 7
6 111.47 humidity 60.0 4320 < th dose dependent rect. 18 1
7 111.55 humidity 60.0 4320 > th dose independent rect. 18 2
20 111.56 humidity 60.0 4320 > th dose independent rect. 18 13
30 112.01 humidity 70.0 4320 < th dose dependent rect. 19 12
31 112.04 humidity 50.0 4320 > th dose independent rect. 16 11
33 112.16 humidity 50.0 4320 > th dose independent rect. 16 7
35 112.24 humidity 50.0 4320 > th dose independent rect. 16 4
49 112.26 humidity 50.0 4320 > th dose independent rect. 16 15
88 114.36 humidity 50.0 720 > th dose independent rect. 23 16
101 114.87 humidity 70.0 4320 > th dose independent rect. 21 7
103 115.17 atmosphere 1010.0 30 < th dose independent rect. 3 19
116 115.38 humidity 70.0 4320 > th dose independent rect. 21 4
120 115.53 humidity 70.0 4320 > th dose independent rect. 22 1
127 115.85 humidity 50.0 10 > th dose independent rect. 3 23
133 115.91 radiation 1.0 43200 < th dose dependent rect. 3 1
159 116.26 atmosphere 1005.0 90 > th dose dependent rect. 2 1
160 116.27 atmosphere 1010.0 10 < th dose independent rect. 24 22
163 116.34 temperature 10.0 30 > th dose dependent rect. 3 19
165 116.35 radiation 20.0 30 < th dose dependent rect. 3 23
167 116.36 temperature 15.0 30 > th dose independent rect. 3 23
169 116.37 wind 5.0 10 < th dose dependent rect. 22 5
187 116.45 radiation 10.0 30 < th dose independent rect. 3 23
190 116.50 atmosphere 995.0 30 > th dose independent rect. 3 23
193 116.53 humidity 80.0 90 > th dose independent rect. 22 1
194 116.53 atmosphere 1015.0 90 < th dose independent rect. 22 1
195 116.53 radiation 1.0 720 < th dose independent rect. 8 1
196 116.53 radiation 1.0 720 < th dose dependent rect. 8 1
222 116.56 humidity 50.0 4320 < th dose independent rect. 16 1
256 116.62 atmosphere 1010.0 30 < th dose independent rect. 3 23
264 116.72 humidity 60.0 90 > th dose dependent rect. 22 1
267 116.78 wind 3.0 90 < th dose independent rect. 22 1
271 116.79 wind 9.0 90 < th dose dependent rect. 22 1
272 116.80 humidity 70.0 30 > th dose dependent rect. 22 5
273 116.81 temperature 20.0 30 > th dose dependent rect. 2 1
274 116.82 wind 3.0 30 < th dose dependent rect. 2 1
275 116.83 wind 3.0 30 < th dose independent rect. 2 1
287 116.87 temperature 20.0 30 > th dose independent rect. 2 1
288 116.87 humidity 90.0 30 > th dose independent rect. 2 1
292 116.88 atmosphere 1005.0 30 > th dose independent rect. 2 1
294 116.89 humidity 50.0 30 > th dose dependent rect. 2 1
300 116.90 temperature 10.0 30 > th dose independent rect. 2 1
302 116.90 temperature 30.0 30 < th dose independent rect. 2 1
303 116.90 humidity 50.0 30 > th dose independent rect. 2 1
306 116.90 atmosphere 995.0 30 > th dose independent rect. 2 1
307 116.90 atmosphere 1010.0 30 < th dose independent rect. 2 1
309 116.90 radiation 1.0 30 < th dose independent rect. 2 1
314 116.90 precipitation 0.1 30 < th dose independent rect. 2 1
316 116.90 radiation 1.0 30 < th dose dependent rect. 2 1
321 116.90 precipitation 0.1 30 < th dose dependent rect. 2 1
326 116.92 atmosphere 1015.0 30 < th dose dependent rect. 2 1
333 116.94 atmosphere 995.0 90 > th dose independent rect. 23 23
350 116.98 radiation 1.0 4320 < th dose dependent rect. 3 1
354 117.00 temperature 30.0 30 < th dose dependent rect. 2 1
358 117.02 precipitation 0.1 90 < th dose independent rect. 22 1
359 117.02 precipitation 0.1 90 < th dose dependent rect. 22 1
360 117.03 temperature 10.0 90 > th dose independent rect. 22 1
361 117.03 temperature 30.0 90 < th dose independent rect. 22 1
362 117.03 humidity 50.0 90 > th dose independent rect. 22 1
365 117.03 atmosphere 995.0 90 > th dose independent rect. 22 1
366 117.03 radiation 1.0 90 < th dose independent rect. 22 1
371 117.03 wind 9.0 90 < th dose independent rect. 23 23
372 117.03 temperature 10.0 90 > th dose independent rect. 23 23
374 117.03 radiation 1.0 90 < th dose dependent rect. 22 1
383 117.05 wind 5.0 30 < th dose independent rect. 22 5
384 117.06 wind 1.0 30 > th dose independent rect. 2 1
385 117.06 atmosphere 995.0 30 > th dose independent rect. 3 19
386 117.07 precipitation 0.1 30 < th dose independent rect. 3 23
390 117.07 precipitation 0.1 30 < th dose dependent rect. 3 23
398 117.12 atmosphere 1010.0 270 > th dose dependent rect. 12 1
408 117.14 atmosphere 1010.0 10 > th dose dependent rect. 12 1
445 117.16 humidity 80.0 30 > th dose independent rect. 22 5
446 117.16 atmosphere 1015.0 30 < th dose independent rect. 22 5
458 117.19 wind 9.0 1440 < th dose independent rect. 3 1
459 117.19 temperature 10.0 1440 > th dose independent rect. 3 1
462 117.19 temperature 30.0 1440 < th dose independent rect. 3 1
466 117.19 humidity 50.0 1440 > th dose independent rect. 3 1
476 117.19 atmosphere 995.0 1440 > th dose independent rect. 3 1
477 117.19 radiation 1.0 1440 < th dose independent rect. 3 1
497 117.19 temperature 10.0 1440 > th dose independent rect. 4 23
512 117.23 radiation 40.0 1440 < th dose independent rect. 15 8
557 117.26 wind 7.0 90 < th dose independent rect. 3 18
648 117.32 atmosphere 995.0 90 > th dose dependent rect. 22 1
690 117.34 temperature 10.0 30 > th dose dependent rect. 3 23
720 117.38 wind 9.0 30 < th dose dependent rect. 3 19
724 117.39 wind 9.0 30 < th dose independent rect. 3 23
771 117.45 precipitation 0.1 30 < th dose independent rect. 3 19
772 117.45 precipitation 0.1 30 < th dose dependent rect. 3 19
788 117.47 radiation 10.0 30 < th dose independent rect. 3 19
877 117.51 humidity 50.0 10 > th dose independent rect. 3 19
918 117.55 precipitation 0.1 30 < th dose independent rect. 22 5
923 117.55 radiation 40.0 1440 < th dose independent rect. 15 17
924 117.55 wind 9.0 4320 > th dose dependent rect. 14 1
925 117.55 temperature 10.0 90 > th dose dependent rect. 22 1
927 117.55 precipitation 0.1 30 < th dose dependent rect. 22 5
929 117.56 temperature 10.0 30 > th dose independent rect. 22 5
930 117.56 temperature 30.0 30 < th dose independent rect. 22 5
931 117.56 humidity 50.0 30 > th dose independent rect. 22 5
934 117.56 atmosphere 995.0 30 > th dose independent rect. 22 5
935 117.56 radiation 1.0 30 < th dose independent rect. 22 5
940 117.56 temperature 10.0 30 > th dose independent rect. 3 19
943 117.56 atmosphere 1010.0 30 > th dose dependent sin 23 NA
947 117.56 radiation 1.0 30 < th dose dependent rect. 22 5
973 117.57 radiation 40.0 30 < th dose dependent rect. 3 19
985 117.59 atmosphere 1005.0 30 > th dose dependent rect. 11 17