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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0612000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ent-kaurene synthase-like protein 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.027) R2 : 0.00376
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0745 (0.0568) R2dN8 : 0.00486 R2N8 : 0.00376
σ : 0.508
deviance : 118.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.26 0.498 3.51 0.152 0.141 1.12 -0.654 5.83 -0.102 4 7.304 779 -- --
115.88 0.505 3.45 0.0712 0.161 0.0406 -0.614 -- -0.0723 4.41 7.304 779 -- --
113.44 0.496 3.51 0.155 0.144 1.14 -- 5.8 -0.104 4.81 7.312 778 -- --
116.47 0.503 3.45 0.0495 0.17 -0.159 -- -- -0.0732 4.02 10.9 1068 -- --
114.42 0.498 3.5 0.164 -- 1.14 -- 5.98 -0.0906 -- 7.301 719 -- --
115.89 0.505 3.45 0.0663 0.157 -- -0.601 -- -0.0732 4.42 -- -- -- --
116.87 0.506 3.45 0.071 0.153 -- -- -- -0.07 4.19 -- -- -- --
116.44 0.503 3.45 0.0363 -- -0.266 -- -- -0.0855 -- 10.9 2625 -- --
115.3 0.5 3.45 -- 0.156 -0.25 -- -- -0.0828 3.66 10.92 2614 -- --
118.13 0.508 3.45 0.0771 -- -- -- -- -0.0659 -- -- -- -- --
117 0.506 3.45 -- 0.154 -- -- -- -0.0779 4.19 -- -- -- --
116.46 0.503 3.46 -- -- -0.275 -- -- -0.0945 -- 11.05 2606 -- --
118.29 0.508 3.45 -- -- -- -- -- -0.0745 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.16 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 106.36 atmosphere 1005.0 90 > th dose dependent rect. 2 1
4 106.67 radiation 1.0 43200 < th dose dependent rect. 3 1
7 106.95 wind 3.0 30 < th dose dependent rect. 2 1
8 106.96 wind 3.0 30 < th dose independent rect. 2 1
9 106.96 temperature 20.0 30 > th dose dependent rect. 2 1
10 106.97 temperature 25.0 90 > th dose independent rect. 1 1
11 106.97 wind 9.0 30 < th dose independent rect. 3 23
23 107.03 temperature 10.0 30 > th dose independent rect. 2 1
25 107.03 temperature 30.0 30 < th dose independent rect. 2 1
26 107.03 humidity 50.0 30 > th dose independent rect. 2 1
29 107.03 atmosphere 995.0 30 > th dose independent rect. 2 1
30 107.03 atmosphere 1010.0 30 < th dose independent rect. 2 1
32 107.03 radiation 1.0 30 < th dose independent rect. 2 1
37 107.03 precipitation 0.1 30 < th dose independent rect. 2 1
38 107.03 temperature 10.0 30 > th dose independent rect. 3 23
40 107.03 atmosphere 1015.0 30 < th dose dependent rect. 2 1
41 107.03 radiation 1.0 30 < th dose dependent rect. 2 1
46 107.03 precipitation 0.1 30 < th dose dependent rect. 2 1
48 107.04 atmosphere 1005.0 30 > th dose independent rect. 2 1
49 107.04 humidity 50.0 30 > th dose dependent rect. 2 1
52 107.05 humidity 90.0 30 > th dose independent rect. 2 1
61 107.12 temperature 30.0 30 < th dose dependent rect. 2 1
71 107.24 wind 1.0 30 > th dose independent rect. 2 1
104 107.43 precipitation 0.1 30 < th dose independent rect. 3 23
111 107.43 precipitation 0.1 30 < th dose dependent rect. 3 23
133 107.60 wind 9.0 1440 < th dose independent rect. 3 1
134 107.60 temperature 10.0 1440 > th dose independent rect. 3 1
137 107.60 temperature 30.0 1440 < th dose independent rect. 3 1
141 107.60 humidity 50.0 1440 > th dose independent rect. 3 1
150 107.60 atmosphere 995.0 1440 > th dose independent rect. 3 1
151 107.60 radiation 1.0 1440 < th dose independent rect. 3 1
171 107.60 temperature 10.0 1440 > th dose independent rect. 4 23
180 107.61 humidity 50.0 720 > th dose independent rect. 23 16
187 108.15 radiation 10.0 30 < th dose dependent rect. 3 23
188 108.24 humidity 50.0 720 > th dose independent rect. 7 8
192 108.53 humidity 50.0 1440 > th dose independent rect. 17 10
193 108.54 humidity 50.0 1440 > th dose independent rect. 17 17
197 108.68 humidity 50.0 1440 > th dose independent rect. 17 3
199 108.72 humidity 50.0 1440 > th dose independent rect. 17 6
202 108.74 humidity 50.0 1440 < th dose independent rect. 17 17
210 108.76 humidity 50.0 1440 < th dose dependent rect. 16 19
213 108.80 humidity 50.0 1440 < th dose dependent rect. 17 17
216 108.83 humidity 50.0 1440 < th dose independent rect. 17 1
233 108.84 humidity 50.0 1440 < th dose dependent rect. 17 1
252 108.93 humidity 50.0 1440 < th dose independent rect. 16 19
270 109.03 wind 1.0 30 < th dose independent rect. 23 4
332 109.09 humidity 50.0 30 > th dose independent rect. 3 23
336 109.29 humidity 80.0 14400 < th dose dependent rect. 2 7
373 109.47 wind 7.0 720 < th dose independent rect. 13 16
430 109.87 humidity 50.0 4320 > th dose independent rect. 14 1
432 109.89 wind 7.0 720 > th dose dependent sin 13 NA
433 109.93 wind 7.0 720 > th dose dependent rect. 14 12
441 109.95 wind 1.0 30 < th dose independent rect. 14 13
450 110.02 humidity 50.0 4320 < th dose independent rect. 14 1
464 110.06 wind 7.0 720 > th dose dependent rect. 14 8
466 110.07 humidity 70.0 14400 > th dose independent rect. 8 1
471 110.10 humidity 90.0 90 < th dose independent rect. 2 1
496 110.14 temperature 10.0 30 > th dose dependent rect. 3 23
529 110.19 wind 7.0 720 > th dose dependent rect. 14 4
530 110.19 wind 9.0 720 > th dose dependent rect. 12 6
532 110.20 wind 7.0 720 < th dose independent rect. 15 15
533 110.23 humidity 60.0 1440 > th dose independent rect. 19 12
536 110.24 humidity 50.0 4320 < th dose dependent rect. 14 1
538 110.25 humidity 70.0 14400 < th dose independent rect. 8 1
540 110.26 wind 9.0 720 > th dose independent rect. 12 6
545 110.28 humidity 80.0 720 > th dose dependent rect. 3 1
562 110.30 precipitation 0.1 720 < th dose independent rect. 15 8
570 110.30 precipitation 0.1 720 < th dose dependent rect. 15 8
618 110.46 humidity 70.0 14400 > th dose independent rect. 4 5
619 110.46 wind 9.0 720 > th dose independent rect. 12 11
631 110.46 wind 7.0 720 > th dose dependent rect. 17 10
637 110.47 humidity 70.0 14400 > th dose independent rect. 2 7
704 110.53 humidity 90.0 1440 < th dose independent rect. 2 2
741 110.55 wind 7.0 720 > th dose dependent rect. 16 2
746 110.57 wind 7.0 1440 < th dose independent rect. 13 4
763 110.59 atmosphere 1000.0 720 > th dose independent rect. 3 8
767 110.59 radiation 1.0 720 > th dose dependent rect. 15 1
775 110.60 wind 7.0 720 < th dose independent rect. 3 17
779 110.61 wind 9.0 720 < th dose independent sin 14 NA
784 110.61 wind 7.0 720 > th dose dependent rect. 17 5
787 110.62 atmosphere 995.0 720 > th dose independent rect. 23 16
788 110.62 radiation 1.0 30 < th dose independent rect. 3 23
790 110.63 wind 5.0 10 > th dose independent rect. 17 1
791 110.63 temperature 10.0 720 > th dose independent rect. 15 8
792 110.63 temperature 10.0 720 > th dose independent rect. 23 16
832 110.68 temperature 10.0 720 > th dose independent rect. 3 8
833 110.68 humidity 50.0 720 > th dose independent rect. 3 8
835 110.68 temperature 10.0 720 > th dose independent rect. 11 16
841 110.70 humidity 90.0 1440 < th dose independent rect. 1 4
842 110.70 humidity 70.0 14400 < th dose independent rect. 20 13
858 110.73 precipitation 0.1 720 < th dose independent rect. 11 16
859 110.73 precipitation 0.1 720 < th dose dependent rect. 11 16
878 110.76 wind 7.0 720 < th dose independent rect. 23 23
880 110.77 wind 1.0 30 < th dose independent rect. 8 19
886 110.79 wind 7.0 720 > th dose independent sin 13 NA
916 110.82 wind 9.0 30 < th dose dependent rect. 3 23
922 110.84 radiation 30.0 720 > th dose independent rect. 15 1
928 110.85 wind 9.0 720 < th dose independent rect. 19 8
948 110.86 wind 9.0 720 > th dose independent rect. 17 1
996 110.88 humidity 90.0 720 > th dose independent rect. 3 1
998 110.88 wind 9.0 720 < th dose independent rect. 3 8
1000 110.88 wind 7.0 720 < th dose independent rect. 11 18