Os04g0611800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.
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Os04g0611800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.26 | 0.267 | 10.8 | -0.904 | 0.423 | -0.559 | 0.143 | 0.419 | -0.367 | 2.04 | 82.18 | 708 | -- | -- |
| 32.45 | 0.265 | 10.8 | -0.859 | 0.42 | -0.545 | 0.125 | -- | -0.368 | 1.94 | 83 | 697 | -- | -- |
| 32.33 | 0.265 | 10.8 | -0.906 | 0.425 | -0.556 | -- | 0.395 | -0.367 | 2.04 | 82.13 | 704 | -- | -- |
| 32.49 | 0.265 | 10.8 | -0.863 | 0.416 | -0.541 | -- | -- | -0.371 | 1.9 | 83.16 | 698 | -- | -- |
| 37.61 | 0.286 | 10.8 | -0.869 | -- | -0.822 | -- | 0.33 | -0.395 | -- | 84 | 933 | -- | -- |
| 39.49 | 0.295 | 10.8 | -0.886 | 0.554 | -- | -0.0626 | -- | -0.343 | 23.5 | -- | -- | -- | -- |
| 39.51 | 0.294 | 10.8 | -0.883 | 0.554 | -- | -- | -- | -0.343 | 23.5 | -- | -- | -- | -- |
| 37.8 | 0.286 | 10.8 | -0.849 | -- | -0.871 | -- | -- | -0.388 | -- | 83 | 959 | -- | -- |
| 51.75 | 0.335 | 10.8 | -- | 0.461 | -0.542 | -- | -- | -0.354 | 2.17 | 85 | 589 | -- | -- |
| 58.77 | 0.358 | 10.8 | -0.868 | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
| 60.06 | 0.363 | 10.8 | -- | 0.544 | -- | -- | -- | -0.244 | 23.4 | -- | -- | -- | -- |
| 54.95 | 0.345 | 10.8 | -- | -- | -0.856 | -- | -- | -0.359 | -- | 86.3 | 895 | -- | -- |
| 78.65 | 0.414 | 10.8 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 2 | 31.53 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 31.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 4 | 31.75 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 7 | 31.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 10 | 31.84 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 11 | 31.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 29 | 31.92 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 41 | 32.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 61 | 32.12 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 74 | 32.18 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 104 | 32.27 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 120 | 32.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 123 | 32.36 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 125 | 32.36 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 147 | 32.44 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 23 |
| 150 | 32.45 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 152 | 32.45 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 173 | 32.52 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 22 |
| 177 | 32.53 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 188 | 32.55 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 198 | 32.57 | humidity | 90 | 1440 | < th | dose dependent | sin | 3 | NA |
| 254 | 32.63 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 257 | 32.64 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 21 |
| 258 | 32.64 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 23 |
| 263 | 32.65 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 19 |
| 265 | 32.65 | humidity | 70 | 720 | > th | dose dependent | sin | 19 | NA |
| 270 | 32.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 271 | 32.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 301 | 32.67 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 303 | 32.68 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 23 |
| 310 | 32.69 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 13 |
| 321 | 32.70 | humidity | 80 | 720 | < th | dose independent | rect. | 3 | 19 |
| 326 | 32.71 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 15 |
| 345 | 32.73 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 13 |
| 365 | 32.75 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 412 | 32.80 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 23 |
| 444 | 32.83 | humidity | 80 | 720 | < th | dose independent | sin | 21 | NA |
| 449 | 32.83 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 450 | 32.83 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 462 | 32.84 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 23 |
| 473 | 32.85 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 23 |
| 497 | 32.87 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 23 |
| 538 | 32.90 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 19 |
| 539 | 32.90 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 540 | 32.90 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 23 |
| 618 | 32.95 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |
| 663 | 32.96 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 715 | 32.99 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 724 | 33.00 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 746 | 33.00 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 747 | 33.01 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 820 | 33.03 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 878 | 33.06 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 23 |
| 895 | 33.07 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 23 |
| 926 | 33.10 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 942 | 33.11 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 10 |