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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0611700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ent-kaurene synthase like-2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0179) R2 : 0.00156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0318 (0.0377) R2dN8 : 0.00201 R2N8 : 0.00156
σ : 0.337
deviance : 52.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.24 0.326 2.94 0.2 0.0402 1.24 -0.333 4.42 0.0306 1.54 7.1 839 -- --
51.12 0.333 2.9 0.0777 0.0899 0.243 -0.209 -- 0.0361 1.12 8.3 988 -- --
48.64 0.325 2.93 0.208 0.0442 1.2 -- 4.09 0.036 3.04 7.172 838 -- --
50.84 0.332 2.89 0.124 0.05 0.298 -- -- 0.0482 2.86 6.3 798 -- --
48.75 0.325 2.93 0.215 -- 1.23 -- 4.14 0.0372 -- 7.2 838 -- --
51.52 0.337 2.9 0.0605 0.0831 -- -0.211 -- 0.0369 1.14 -- -- -- --
51.71 0.337 2.9 0.0681 0.0832 -- -- -- 0.0382 0.889 -- -- -- --
50.97 0.333 2.89 0.138 -- 0.349 -- -- 0.0518 -- 6.1 839 -- --
51.23 0.333 2.89 -- 0.055 0.265 -- -- 0.0404 2.51 6.1 839 -- --
52.14 0.337 2.9 0.0712 -- -- -- -- 0.0397 -- -- -- -- --
51.83 0.337 2.9 -- 0.0843 -- -- -- 0.0306 0.924 -- -- -- --
51.43 0.334 2.9 -- -- 0.283 -- -- 0.0364 -- 6.1 838 -- --
52.27 0.337 2.9 -- -- -- -- -- 0.0318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.71 radiation 1.0 4320 < th dose dependent rect. 23 1
2 44.76 wind 9.0 30 < th dose independent rect. 23 23
4 44.79 radiation 30.0 43200 < th dose dependent rect. 23 1
7 44.82 atmosphere 1005.0 30 > th dose dependent rect. 22 1
15 44.83 wind 3.0 30 < th dose independent rect. 22 1
16 44.83 wind 9.0 1440 < th dose independent rect. 23 1
17 44.83 temperature 20.0 30 > th dose independent rect. 22 1
19 44.83 temperature 10.0 1440 > th dose independent rect. 23 1
22 44.83 temperature 30.0 1440 < th dose independent rect. 23 1
26 44.83 humidity 80.0 30 > th dose independent rect. 22 1
27 44.83 humidity 50.0 1440 > th dose independent rect. 23 1
37 44.83 atmosphere 995.0 1440 > th dose independent rect. 23 1
38 44.83 radiation 1.0 1440 < th dose independent rect. 23 1
58 44.83 temperature 10.0 1440 > th dose independent rect. 24 23
61 44.83 atmosphere 995.0 30 > th dose independent rect. 23 23
62 44.83 wind 5.0 30 < th dose dependent rect. 22 1
63 44.83 temperature 10.0 30 > th dose dependent rect. 22 1
67 44.83 atmosphere 995.0 30 > th dose dependent rect. 22 1
74 44.84 wind 7.0 30 < th dose independent rect. 22 1
77 44.84 temperature 10.0 30 > th dose independent rect. 22 1
79 44.84 temperature 30.0 30 < th dose independent rect. 22 1
80 44.84 humidity 50.0 30 > th dose independent rect. 22 1
83 44.84 atmosphere 995.0 30 > th dose independent rect. 22 1
86 44.84 atmosphere 1010.0 30 < th dose independent rect. 22 1
88 44.84 radiation 1.0 30 < th dose independent rect. 22 1
93 44.84 temperature 10.0 30 > th dose independent rect. 23 23
97 44.84 humidity 50.0 30 > th dose dependent rect. 22 1
100 44.84 radiation 1.0 30 < th dose dependent rect. 22 1
105 44.85 wind 1.0 30 > th dose independent rect. 22 1
107 44.85 humidity 90.0 30 < th dose independent rect. 22 1
108 44.85 precipitation 0.1 30 < th dose independent rect. 22 1
111 44.85 precipitation 0.1 30 < th dose dependent rect. 22 1
113 44.87 atmosphere 1015.0 30 < th dose dependent rect. 22 1
117 44.91 precipitation 0.1 30 < th dose independent rect. 23 23
118 44.91 humidity 90.0 30 < th dose dependent rect. 22 1
121 44.91 precipitation 0.1 30 < th dose dependent rect. 23 23
123 44.92 wind 1.0 30 > th dose dependent rect. 22 1
126 44.93 temperature 30.0 30 < th dose dependent rect. 22 1
186 45.73 precipitation 0.1 1440 < th dose independent rect. 23 1
187 45.73 precipitation 0.1 1440 < th dose dependent rect. 23 1
190 45.79 wind 9.0 1440 > th dose dependent rect. 12 1
193 45.91 wind 9.0 1440 > th dose independent rect. 12 1
214 46.52 humidity 50.0 30 > th dose independent rect. 23 23
215 46.55 wind 9.0 720 > th dose independent rect. 12 4
217 46.63 wind 9.0 720 > th dose dependent rect. 12 4
249 47.19 wind 9.0 1440 < th dose independent rect. 13 1
265 47.44 wind 9.0 720 > th dose independent rect. 15 1
297 47.61 temperature 30.0 30 < th dose independent rect. 23 23
298 47.62 wind 7.0 720 > th dose dependent rect. 15 1
310 47.86 atmosphere 1015.0 30 < th dose independent rect. 23 23
335 48.13 wind 5.0 1440 < th dose independent rect. 4 1
341 48.15 wind 9.0 30 < th dose dependent rect. 23 23
344 48.16 wind 7.0 1440 < th dose independent rect. 10 6
367 48.23 temperature 25.0 90 > th dose dependent rect. 21 8
370 48.24 wind 9.0 1440 < th dose independent rect. 1 10
371 48.25 wind 5.0 1440 > th dose dependent rect. 5 1
372 48.26 wind 5.0 1440 > th dose independent rect. 5 1
380 48.28 wind 9.0 1440 < th dose independent rect. 4 13
383 48.29 wind 9.0 1440 < th dose independent rect. 1 16
396 48.32 wind 9.0 1440 < th dose independent rect. 1 13
399 48.33 wind 9.0 1440 < th dose independent rect. 4 10
430 48.40 wind 9.0 1440 < th dose independent rect. 4 7
534 48.53 wind 9.0 1440 < th dose independent rect. 22 19
566 48.54 wind 7.0 720 > th dose dependent rect. 19 1
575 48.55 wind 7.0 1440 > th dose dependent rect. 24 17
590 48.57 wind 7.0 720 > th dose independent rect. 12 8
643 48.62 wind 9.0 1440 < th dose independent sin 2 NA
650 48.62 wind 7.0 720 > th dose independent rect. 12 14
725 48.68 temperature 10.0 30 > th dose dependent rect. 23 23
726 48.69 wind 7.0 1440 > th dose independent sin 2 NA
729 48.69 wind 7.0 720 > th dose independent rect. 15 23
795 48.76 wind 7.0 1440 > th dose dependent sin 2 NA
796 48.77 wind 9.0 1440 < th dose independent rect. 7 4
852 48.80 radiation 20.0 10 < th dose dependent rect. 23 23
908 48.84 wind 7.0 720 > th dose independent rect. 18 23
919 48.85 wind 7.0 720 > th dose independent sin 21 NA
935 48.86 wind 7.0 720 < th dose independent rect. 9 16
942 48.86 wind 7.0 720 > th dose dependent rect. 12 8
943 48.86 wind 7.0 720 > th dose dependent rect. 18 23
981 48.89 wind 7.0 720 > th dose independent rect. 15 5
995 48.89 wind 7.0 720 > th dose dependent rect. 12 14