Os04g0611300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0611300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.86 | 0.375 | 13.3 | 0.966 | 0.601 | 1.45 | 0.618 | -0.792 | 0.484 | 1.26 | 21.05 | 4332 | -- | -- |
| 64.89 | 0.375 | 13.2 | 1.06 | 0.631 | 1.59 | 0.661 | -- | 0.503 | 1.34 | 21 | 4510 | -- | -- |
| 65.36 | 0.377 | 13.3 | 0.959 | 0.606 | 1.43 | -- | -0.795 | 0.483 | 1.22 | 21.1 | 4411 | -- | -- |
| 66.26 | 0.379 | 13.2 | 1.09 | 0.617 | 1.58 | -- | -- | 0.514 | 1.28 | 21 | 4548 | -- | -- |
| 84.68 | 0.429 | 13.3 | 1 | -- | 1.46 | -- | -0.731 | 0.48 | -- | 21.2 | 3845 | -- | -- |
| 116.33 | 0.506 | 13.1 | 2.09 | 0.637 | -- | 0.615 | -- | 1.01 | 1.34 | -- | -- | -- | -- |
| 117.87 | 0.508 | 13.1 | 2.07 | 0.636 | -- | -- | -- | 1.01 | 1.34 | -- | -- | -- | -- |
| 85.35 | 0.43 | 13.2 | 1.14 | -- | 1.56 | -- | -- | 0.527 | -- | 21.1 | 3862 | -- | -- |
| 69.55 | 0.388 | 13.3 | -- | 0.644 | 2.17 | -- | -- | 0.392 | 1.65 | 18.7 | 21941 | -- | -- |
| 142.84 | 0.558 | 13.1 | 2.09 | -- | -- | -- | -- | 1.02 | -- | -- | -- | -- | -- |
| 230.37 | 0.71 | 13.2 | -- | 0.673 | -- | -- | -- | 0.779 | 1.45 | -- | -- | -- | -- |
| 91.58 | 0.446 | 13.3 | -- | -- | 2.19 | -- | -- | 0.35 | -- | 18.5 | 22559 | -- | -- |
| 258.17 | 0.75 | 13.2 | -- | -- | -- | -- | -- | 0.791 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 2 | 63.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 3 | 63.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 6 | 63.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 22 | 64.03 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 28 | 64.10 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 239 | 65.94 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 273 | 66.19 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 307 | 66.38 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 371 | 66.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 373 | 66.71 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 385 | 66.77 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 391 | 66.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 416 | 66.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 424 | 66.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 431 | 66.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 448 | 67.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 449 | 67.06 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 455 | 67.07 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 466 | 67.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 490 | 67.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 496 | 67.31 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 500 | 67.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 534 | 67.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 545 | 67.56 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 558 | 67.59 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 559 | 67.59 | humidity | 60 | 43200 | < th | dose dependent | sin | 9 | NA |
| 567 | 67.64 | humidity | 70 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 576 | 67.69 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 589 | 67.77 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 602 | 67.79 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 606 | 67.81 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 621 | 67.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 622 | 67.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 632 | 67.90 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 8 |
| 670 | 67.97 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 672 | 67.97 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 716 | 68.06 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 726 | 68.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 746 | 68.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 756 | 68.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 757 | 68.14 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 781 | 68.19 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 813 | 68.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 861 | 68.30 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 875 | 68.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 878 | 68.32 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 11 | NA |
| 885 | 68.33 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 943 | 68.41 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 994 | 68.48 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |